From 1aa8309ae1919263166f895b46810a7575fd8c88 Mon Sep 17 00:00:00 2001 From: aakan96 <aakan96@mi.fu-berlin.de> Date: Fri, 21 Jul 2023 13:23:29 +0000 Subject: [PATCH] Update file README.md --- 01_Differential_Expression_Analysis/README.md | 14 +++++++++++++- 1 file changed, 13 insertions(+), 1 deletion(-) diff --git a/01_Differential_Expression_Analysis/README.md b/01_Differential_Expression_Analysis/README.md index 527b6e7..3346493 100644 --- a/01_Differential_Expression_Analysis/README.md +++ b/01_Differential_Expression_Analysis/README.md @@ -1,3 +1,15 @@ Deseq2: contains the scripts that we used for DGEA with deseq2 package in R.<br /> Limma: contains the scripts that we used for DGEA with limma package in R.<br /> -Merging: contains scripts that we used for merging the mRNA data after DGEA with limma. \ No newline at end of file +Merging: contains scripts that we used for merging the mRNA data after DGEA with limma. + +We used following GEO Datasets in total: +miRNA: +GSE43732: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE43732 +GSE6188: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6188 (discarded) +GSE55857: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE55857 (discarded) + +mRNA: +GSE70409: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70409 +GSE29001: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE29001 +GSE20347: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20347 +GSE23400: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE23400 \ No newline at end of file -- GitLab