diff --git a/Cytoscape/.gitkeep b/Cytoscape/.gitkeep deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/Cytoscape/cytoscape.xlsx b/Cytoscape/cytoscape.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..7ac5ced685feb6cb4c6291277cf96c75a1fd9d39 Binary files /dev/null and b/Cytoscape/cytoscape.xlsx differ diff --git a/Cytoscape/extract_mrna_names_from_mirna.R b/Cytoscape/extract_mrna_names_from_mirna.R new file mode 100644 index 0000000000000000000000000000000000000000..9a0e176aefc37999d2c7fc8bc872fc49b81ab37a --- /dev/null +++ b/Cytoscape/extract_mrna_names_from_mirna.R @@ -0,0 +1,28 @@ +library(readxl) +library(multiMiR) +library(writexl) + +new_list <- read_excel("C:/Users/Emre/Desktop/miRNAmRNA.xlsx", header = TRUE) + +multimir_results <- get_multimir(org = 'hsa', + mirna = mirnames, + table = 'validated', + summary = TRUE) +head(multimir_results@data) + +targets <- multimir_results@data +excel_file <- "C:/Users/Emre/Desktop/Bioinformatik/Bioinformatik 2.Semester Master/Data Science in the Life Sciences/Project/multimir_results.xlsx" +write_xlsx(targets, path = excel_file ) + + +df <- read_excel("C:/Users/Emre/Desktop/multimir_results_cyto.xlsx") +mrna <- read_excel("C:/Users/Emre/Desktop/mRNAs.xlsx") + +mrna_genes <- mrna$external_gene_name + +filtered_df <- df[df$target_symbol %in% mrna_genes | duplicated(df$target_symbol) %in% mrna_genes, ] + +print(filtered_df) + +output_file <- ("C:/Users/Emre/Desktop/cytoscape.xlsx") +write_xlsx(filtered_df, output_file) diff --git a/Cytoscape/miRNAmRNA.xlsx b/Cytoscape/miRNAmRNA.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..9f650ab3e1cc753e55437e3ed812815e8528274a Binary files /dev/null and b/Cytoscape/miRNAmRNA.xlsx differ diff --git a/Cytoscape/multimir_results.xlsx b/Cytoscape/multimir_results.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..5179d56981dfb0518ab7e311fcfcff9d9e729889 Binary files /dev/null and b/Cytoscape/multimir_results.xlsx differ diff --git a/Cytoscape/new.png b/Cytoscape/new.png new file mode 100644 index 0000000000000000000000000000000000000000..bc2a443c10945d6a4f3ff74d4c11675d52ad1f15 Binary files /dev/null and b/Cytoscape/new.png differ diff --git a/project.PNG b/project.PNG deleted file mode 100644 index 5468604b154878df572abaf37dcb9746783c6853..0000000000000000000000000000000000000000 Binary files a/project.PNG and /dev/null differ diff --git a/project_workflow.PNG b/project_workflow.PNG new file mode 100644 index 0000000000000000000000000000000000000000..8d355ce52bf49342d8ccff5ebf3144cbbbb25cd4 Binary files /dev/null and b/project_workflow.PNG differ