From 5bdac8b515fd5834c1ba6d3355a40e67039c2fbe Mon Sep 17 00:00:00 2001
From: aakan96 <aakan96@mi.fu-berlin.de>
Date: Fri, 14 Jul 2023 20:42:23 +0000
Subject: [PATCH] Update file DS_mRNA_limma_dataset_svm_F.ipynb
---
.../DS_mRNA_limma_dataset_svm_F.ipynb | 757 ------------------
1 file changed, 757 deletions(-)
diff --git a/Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb b/Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb
index 9b7ed74..e23425f 100644
--- a/Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb
+++ b/Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb
@@ -68,391 +68,6 @@
"df_test = df_test.T"
]
},
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- "Gene symbol INO80B-WBP1///INO80B SNHG17 MEX3D DCAF15 \n",
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{
"cell_type": "code",
"execution_count": 129,
@@ -826,378 +441,6 @@
"# Feature Selection"
]
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- " <td>1071</td>\n",
- " <td>10289</td>\n",
- " <td>379</td>\n",
- " <td>65131</td>\n",
- " <td>206</td>\n",
- " <td>1251</td>\n",
- " <td>11768</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>3</th>\n",
- " <td>104</td>\n",
- " <td>1636</td>\n",
- " <td>19203</td>\n",
- " <td>127</td>\n",
- " <td>1518</td>\n",
- " <td>17951</td>\n",
- " <td>16854</td>\n",
- " <td>12800</td>\n",
- " <td>11939</td>\n",
- " <td>5136</td>\n",
- " <td>...</td>\n",
- " <td>213</td>\n",
- " <td>122</td>\n",
- " <td>244</td>\n",
- " <td>482</td>\n",
- " <td>3578</td>\n",
- " <td>1990</td>\n",
- " <td>37715</td>\n",
- " <td>66</td>\n",
- " <td>361</td>\n",
- " <td>8517</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>4</th>\n",
- " <td>205</td>\n",
- " <td>4720</td>\n",
- " <td>56984</td>\n",
- " <td>495</td>\n",
- " <td>3309</td>\n",
- " <td>24427</td>\n",
- " <td>28197</td>\n",
- " <td>5718</td>\n",
- " <td>8192</td>\n",
- " <td>6748</td>\n",
- " <td>...</td>\n",
- " <td>169</td>\n",
- " <td>275</td>\n",
- " <td>200</td>\n",
- " <td>3632</td>\n",
- " <td>7275</td>\n",
- " <td>509</td>\n",
- " <td>65138</td>\n",
- " <td>188</td>\n",
- " <td>587</td>\n",
- " <td>9390</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>...</th>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>214</th>\n",
- " <td>4</td>\n",
- " <td>5</td>\n",
- " <td>9</td>\n",
- " <td>6</td>\n",
- " <td>7</td>\n",
- " <td>7</td>\n",
- " <td>10</td>\n",
- " <td>8</td>\n",
- " <td>7</td>\n",
- " <td>7</td>\n",
- " <td>...</td>\n",
- " <td>7</td>\n",
- " <td>4</td>\n",
- " <td>9</td>\n",
- " <td>6</td>\n",
- " <td>7</td>\n",
- " <td>7</td>\n",
- " <td>7</td>\n",
- " <td>6</td>\n",
- " <td>5</td>\n",
- " <td>8</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>215</th>\n",
- " <td>5</td>\n",
- " <td>5</td>\n",
- " <td>8</td>\n",
- " <td>8</td>\n",
- " <td>8</td>\n",
- " <td>8</td>\n",
- " <td>9</td>\n",
- " <td>8</td>\n",
- " <td>6</td>\n",
- " <td>7</td>\n",
- " <td>...</td>\n",
- " <td>7</td>\n",
- " <td>4</td>\n",
- " <td>9</td>\n",
- " <td>6</td>\n",
- " <td>6</td>\n",
- " <td>7</td>\n",
- " <td>9</td>\n",
- " <td>6</td>\n",
- " <td>5</td>\n",
- " <td>8</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>216</th>\n",
- " <td>4</td>\n",
- " <td>5</td>\n",
- " <td>9</td>\n",
- " <td>6</td>\n",
- " <td>7</td>\n",
- " <td>8</td>\n",
- " <td>9</td>\n",
- " <td>8</td>\n",
- " <td>7</td>\n",
- " <td>7</td>\n",
- " <td>...</td>\n",
- " <td>7</td>\n",
- " <td>5</td>\n",
- " <td>9</td>\n",
- " <td>6</td>\n",
- " <td>6</td>\n",
- " <td>7</td>\n",
- " <td>8</td>\n",
- " <td>6</td>\n",
- " <td>5</td>\n",
- " <td>8</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>217</th>\n",
- " <td>5</td>\n",
- " <td>4</td>\n",
- " <td>9</td>\n",
- " <td>7</td>\n",
- " <td>8</td>\n",
- " <td>8</td>\n",
- " <td>9</td>\n",
- " <td>8</td>\n",
- " <td>6</td>\n",
- " <td>7</td>\n",
- " <td>...</td>\n",
- " <td>7</td>\n",
- " <td>4</td>\n",
- " <td>10</td>\n",
- " <td>6</td>\n",
- " <td>8</td>\n",
- " <td>7</td>\n",
- " <td>8</td>\n",
- " <td>6</td>\n",
- " <td>5</td>\n",
- " <td>8</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>218</th>\n",
- " <td>4</td>\n",
- " <td>4</td>\n",
- " <td>7</td>\n",
- " <td>6</td>\n",
- " <td>8</td>\n",
- " <td>8</td>\n",
- " <td>10</td>\n",
- " <td>8</td>\n",
- " <td>7</td>\n",
- " <td>7</td>\n",
- " <td>...</td>\n",
- " <td>6</td>\n",
- " <td>5</td>\n",
- " <td>10</td>\n",
- " <td>6</td>\n",
- " <td>6</td>\n",
- " <td>7</td>\n",
- " <td>6</td>\n",
- " <td>5</td>\n",
- " <td>5</td>\n",
- " <td>8</td>\n",
- " </tr>\n",
- " </tbody>\n",
- "</table>\n",
- "<p>219 rows × 578 columns</p>\n",
- "</div>"
- ],
- "text/plain": [
- " ABAT ABHD5 ABLIM1 ABLIM3 ACAA1 ACADM ACADVL ACD ACLY ACOT11 \\\n",
- "0 186 2603 42653 220 2132 22869 19775 4486 8835 2332 \n",
- "1 93 1137 16493 69 1816 17788 16870 7993 21434 2211 \n",
- "2 198 5593 53918 263 3490 39276 25847 4413 9212 7419 \n",
- "3 104 1636 19203 127 1518 17951 16854 12800 11939 5136 \n",
- "4 205 4720 56984 495 3309 24427 28197 5718 8192 6748 \n",
- ".. ... ... ... ... ... ... ... ... ... ... \n",
- "214 4 5 9 6 7 7 10 8 7 7 \n",
- "215 5 5 8 8 8 8 9 8 6 7 \n",
- "216 4 5 9 6 7 8 9 8 7 7 \n",
- "217 5 4 9 7 8 8 9 8 6 7 \n",
- "218 4 4 7 6 8 8 10 8 7 7 \n",
- "\n",
- " ... XYLT1 YOD1 YTHDC1 ZBTB16 ZDHHC13 ZFP64 ZNF185 ZNF365 ZNF426 \\\n",
- "0 ... 392 222 295 4598 7009 568 65123 56 308 \n",
- "1 ... 62 78 144 2132 2602 1720 13531 47 140 \n",
- "2 ... 481 355 308 1071 10289 379 65131 206 1251 \n",
- "3 ... 213 122 244 482 3578 1990 37715 66 361 \n",
- "4 ... 169 275 200 3632 7275 509 65138 188 587 \n",
- ".. ... ... ... ... ... ... ... ... ... ... \n",
- "214 ... 7 4 9 6 7 7 7 6 5 \n",
- "215 ... 7 4 9 6 6 7 9 6 5 \n",
- "216 ... 7 5 9 6 6 7 8 6 5 \n",
- "217 ... 7 4 10 6 8 7 8 6 5 \n",
- "218 ... 6 5 10 6 6 7 6 5 5 \n",
- "\n",
- " ZNF710 \n",
- "0 10385 \n",
- "1 6441 \n",
- "2 11768 \n",
- "3 8517 \n",
- "4 9390 \n",
- ".. ... \n",
- "214 8 \n",
- "215 8 \n",
- "216 8 \n",
- "217 8 \n",
- "218 8 \n",
- "\n",
- "[219 rows x 578 columns]"
- ]
- },
- "execution_count": 82,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
- "source": [
- "X"
- ]
- },
{
"cell_type": "code",
"execution_count": 83,
--
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