barabab03 closed issue #15: create_sample_sheet at barabab03 / gene_expression_analysis

barabab03
2024-09-18T09:28:16Z

Umgekehrt zu #11

rule create_sample_sheet:
input:
annotations=expand("results/round{{round}}/annotation/{species}_filtered_annotation.gtf", species=species_list),
reference_genome=lambda wildcards: [
f"results/round{int(wildcards.round) + 1}/consensus/{species}/consensus.fa"
for species in samples['species'].unique()]
output:
fqs="results/samples_round{round}/sample.tsv"

Das round+1 ist hier doch falsch, oder? Die consensus Sequenz und dazugehörige Annotation nach Runde x, sind doch

f"results/round{x}/consensus/{species}/consensus.fa" und
"results/round{x}/annotation/{species}_filtered_annotation.gtf"

Oder nicht?