From fde3dcffbf4b3d0f9998bbee0f4f4720e40d49e9 Mon Sep 17 00:00:00 2001 From: ddepanis <ddepanis@mi.fu-berlin.de> Date: Tue, 27 Aug 2024 10:08:18 +0000 Subject: [PATCH] Guille's fix --- README.md | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/README.md b/README.md index 0dd0a88..41f52d7 100644 --- a/README.md +++ b/README.md @@ -208,8 +208,7 @@ If you are a little uncertain about which short-read libraries you should use, s <div id="hifi-sample"></div> #### PacBio HiFi Sample Sheet `.tsv` - for **Build** mode -(see example [GEP/configuration/exampleSampleSheets/build_hifi_example.tsv](configuration/exampleSampleSheets/runEval_example.tsv)) - +(see example [GEP/configuration/exampleSampleSheets/build_hifi_example.tsv](configuration/exampleSampleSheets/build_hifi_example.tsv) |sample|hifi_reads|meryl_kmer_size| trimSMRTbell| fastQC| |:----|:---|:---|:----|:---| |Your preferred identifier (Results will include this sample name in output files) <br /><br />**`string`** | **Full path** to PacBio HiFi library **in `fastq` format. Can be `.gz`ipped** | Your choice of k-mer size used to count k-mers in the reads. <br /><br /> **Recommended for PacBio Hifi is `31`**| Check for and remove any SMRT-bell adapter sequences. <br /><br /> **Possible options are `True` or `False`** | Run FastQC on the library provided in `hifi_reads` column. <br /><br /> **Possible options are `True` or `False`** | -- GitLab