From 9ce173f27ebb6162c60302ecdbaf2bbe8c78ac22 Mon Sep 17 00:00:00 2001 From: larissasa <larissasa@mi.fu-berlin.de> Date: Sun, 9 Apr 2023 09:29:14 +0000 Subject: [PATCH] Update README.md --- README.md | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 0774458..586d45f 100644 --- a/README.md +++ b/README.md @@ -69,7 +69,7 @@ This workflow is designed to work on Linux-based operating systems. HPC Cluster To clone the repository, use the following command: ``` -git clone https://git.imp.fu-berlin.de/begendiv/radseq-pre-processing-pipeline.git +git clone https://git.imp.fu-berlin.de/begendiv/radseq-preprocessing-pipeline.git ``` --- @@ -98,7 +98,7 @@ If `conda command not found` please close and re-open your terminal for conda i --- <div id="creating-our-snakemake-conda-environment"></div> -## Creating our GEP (Snakemake) Conda environment +## Creating our RADseq preprocessing (Snakemake) Conda environment The pipeline requires the following software to run: @@ -108,11 +108,11 @@ The pipeline requires the following software to run: - mamba = `1.4.1` - pandas = `1.4.2` -The easiest method to install this software stack is to create a GEP conda environment with the provided `snakemakeEnvironment.yaml` (see ***Note***) +The easiest method to install this software stack is to create a RADseq preprocessing conda environment with the provided `snakemakeEnvironment.yaml` (see ***Note***) ``` -conda env create -f /<your_path_to>/radseq-pre-processing-pipeline/setup/snakemakeEnvironment.yaml +conda env create -f /<your_path_to>/radseq-preprocessing-pipeline/setup/snakemakeEnvironment.yaml conda activate radPreprocessing @@ -150,7 +150,7 @@ These are: ## Running the workflow -From within the main workflow directory (`radseq-pre-processing-pipeline`) where the `Snakefile` is located (make sure your snakemake environment is activated), run with: +From within the main workflow directory (`radseq-preprocessing-pipeline`) where the `Snakefile` is located (make sure your snakemake environment is activated), run with: ``` snakemake --cores # --use-conda -- GitLab