diff --git a/docs/entity.md b/docs/entity.md
index 02a68a29150083e9ebf39d3608e79b21ec810864..ce3784726299767a174201b06538adf8c36c5f6d 100644
--- a/docs/entity.md
+++ b/docs/entity.md
@@ -65,9 +65,9 @@ As described in `robofish.io`, Files and Entities have useful properties.
| Entity function | Description |
| ------------------------------------------------ | ------------------------------------------------------------------------ |
-| `robofish.io.entity.Entity.positions` | Positions as a `(timesteps, 2 (x, y))` arary. |
-| `robofish.io.entity.Entity.orientations` | Orientations as a `(timesteps, 2 (ori_x, ori_y))` arary. |
-| `robofish.io.entity.Entity.orientations_rad` | Orientations as a `(timesteps, 1 (ori_rad))` arary. |
+| `robofish.io.entity.Entity.positions` | Positions as a `(timesteps, 2 (x, y))` array. |
+| `robofish.io.entity.Entity.orientations` | Orientations as a `(timesteps, 2 (ori_x, ori_y))` array. |
+| `robofish.io.entity.Entity.orientations_rad` | Orientations as a `(timesteps, 1 (ori_rad))` array. |
| `robofish.io.entity.Entity.poses` | Poses as a `(timesteps, 4 (x, y, x_ori, y_ori))` array. |
| `robofish.io.entity.Entity.poses_rad` | Poses as a `(timesteps, 3(x, y, ori_rad))` array. |
| `robofish.io.entity.Entity.actions_speeds_turns` | Speed and turn as a `(timesteps - 1, 2 (speed_cm/s, turn_rad/s))` array. |
diff --git a/gen_docs.sh b/gen_docs.sh
index 81aebfcafd1500e56c625521a73149838fb4f6d0..1d99b302231b56a968f26fc66e413c84ee87834e 100755
--- a/gen_docs.sh
+++ b/gen_docs.sh
@@ -1,5 +1,5 @@
cd "${0%/*}"
-pdoc3 --html fish_models --force
-cp -r docs/img/ html/fish_models/
+pdoc3 --html robofish.io --force
+cp -r docs/img/ html/robofish/io
diff --git a/src/robofish/io/entity.py b/src/robofish/io/entity.py
index 83f8c592ac65d10abb4004a32c75ed1af9417084..f1b836aa93b0d144cdb3615f915b23fffc26d14d 100644
--- a/src/robofish/io/entity.py
+++ b/src/robofish/io/entity.py
@@ -151,8 +151,8 @@ class Entity(h5py.Group):
@property
@deprecation.deprecated(
- deprecated_in="1.2",
- removed_in="1.2.4",
+ deprecated_in="0.2",
+ removed_in="0.2.4",
details="We found that our calculation of 'poses_calc_ori_rad' is flawed and replaced it "
"Use the original poses ('poses_rad') with tracked orientations instead. "
"If you see this message and you don't know what to do, update all packages, "
@@ -172,8 +172,8 @@ class Entity(h5py.Group):
@property
@deprecation.deprecated(
- deprecated_in="1.2",
- removed_in="1.2.4",
+ deprecated_in="0.2",
+ removed_in="0.2.4",
details="We found that our calculation of 'poses_calc_ori' is flawed and replaced it "
"Use the original poses ('poses') with tracked orientations instead. "
"If you see this message and you don't know what to do, update all packages, "
@@ -206,8 +206,8 @@ class Entity(h5py.Group):
@property
@deprecation.deprecated(
- deprecated_in="1.2",
- removed_in="1.2.4",
+ deprecated_in="0.2",
+ removed_in="0.2.4",
details="We found that our calculation of 'speed_turn' is flawed and replaced it "
"with 'actions_speeds_turns'. The difference in calculation is, that the tracked "
"orientation is used now which gives the fish the ability to swim backwards. "
diff --git a/src/robofish/io/file.py b/src/robofish/io/file.py
index 04f5ef58f9c21e1485b695011584fd7b6912b782..ff211af4aaa4133ae6fb6868b939db4dd5d6ec96 100644
--- a/src/robofish/io/file.py
+++ b/src/robofish/io/file.py
@@ -424,8 +424,8 @@ class File(h5py.File):
@property
@deprecation.deprecated(
- deprecated_in="1.2",
- removed_in="1.2.4",
+ deprecated_in="0.2",
+ removed_in="0.2.4",
details="We found that our calculation of 'poses_calc_ori' is flawed."
"Please replace it with 'poses' and use the tracked orientation."
"If you see this message and you don't know what to do, update all packages and if nothing helps, contact Andi.\n"
@@ -436,8 +436,8 @@ class File(h5py.File):
@property
@deprecation.deprecated(
- deprecated_in="1.2",
- removed_in="1.2.4",
+ deprecated_in="0.2",
+ removed_in="0.2.4",
details="We found that our calculation of 'poses_calc_ori_rad' is flawed."
"Please replace it with 'poses_rad' and use the tracked orientation."
"If you see this message and you don't know what to do, update all packages and if nothing helps, contact Andi.\n"
@@ -450,8 +450,8 @@ class File(h5py.File):
@property
@deprecation.deprecated(
- deprecated_in="1.2",
- removed_in="1.2.4",
+ deprecated_in="0.2",
+ removed_in="0.2.4",
details="We found that our calculation of 'speed_turn' is flawed and replaced it "
"with 'actions_speeds_turns'. The difference in calculation is, that the tracked "
"orientation is used now which gives the fish the ability to swim backwards. "
diff --git a/tests/robofish/io/test_entity.py b/tests/robofish/io/test_entity.py
index 0101aca08fc3a7742098fbeb7e04ab029f33a17e..0d843bb2829b40b9b0df4b8a05afd27c43b219db 100644
--- a/tests/robofish/io/test_entity.py
+++ b/tests/robofish/io/test_entity.py
@@ -36,7 +36,8 @@ def test_entity_turns_speeds():
There were issues with the calculation of speeds and turns. The corresponding functions were set to be deprecated.
This test was adapted to have plausible orientations which are used when the speeds and turns are calculated.
The reconstructed track is not identical to the original track. The reson for this is unknown.
- TODO: Find the reason, why the reconstructed track differs
+
+ There is an open issue, to check this test again: https://git.imp.fu-berlin.de/bioroboticslab/robofish/io/-/issues/14
"""
f = robofish.io.File(world_size_cm=[100, 100], frequency_hz=25)