diff --git a/configuration/exampleSampleSheets/build_hifi_example.tsv b/configuration/exampleSampleSheets/build_hifi_example.tsv new file mode 100644 index 0000000000000000000000000000000000000000..9373621493faf2d27d203941945d2a9d1c45abf9 --- /dev/null +++ b/configuration/exampleSampleSheets/build_hifi_example.tsv @@ -0,0 +1,6 @@ +sample hifi_reads meryl_kmer_size trimSMRTbell fastQC +ilLasFlex1.1 /srv/public/users/james94/data/ilLasFlex1.1/ERR6565937.fastq 21 True True +ilVanAtal1.2 /srv/public/users/james94/data/ilVanAtal1.2/ERR6608650.fastq 21 False True +ilCyaSemi1.1 /srv/public/users/james94/data/ilCyaSemi1.1/ERR6560795.fastq 21 False True +idScaPyra1.1 /srv/public/users/james94/data/idScaPyra1.1/ERR7057609.fastq 21 True True +idScaPyra1.1 /srv/public/users/james94/data/idScaPyra1.1/ERR7057610.fastq 21 True True diff --git a/configuration/exampleSampleSheets/build_illumina_example.tsv b/configuration/exampleSampleSheets/build_illumina_example.tsv new file mode 100644 index 0000000000000000000000000000000000000000..3cd60f812c317a5a3727c579e718fcce24ec8eab --- /dev/null +++ b/configuration/exampleSampleSheets/build_illumina_example.tsv @@ -0,0 +1,7 @@ +sample Library_R1 Library_R2 meryl_kmer_size trim10X trimAdapters fastQC +ilVanAtal1.2 /srv/public/users/james94/data/ilVanAtal1.2/30996_8_1_R1.trimmed.fq /srv/public/users/james94/data/ilVanAtal1.2/30996_8_1_R2.trimmed.fq 21 False False True +ilVanAtal1.2 /srv/public/users/james94/data/ilVanAtal1.2/30996_8_3_R1.trimmed.fq /srv/public/users/james94/data/ilVanAtal1.2/30996_8_3_R2.trimmed.fq 21 False False True +ilLasFlex1.1 /srv/public/users/james94/data/ilLasFlex1.1/ERR6002656_1.fastq.gz /srv/public/users/james94/data/ilLasFlex1.1/ERR6002656_2.fastq.gz 21 True True True +ilLasFlex1.1 /srv/public/users/james94/data/ilLasFlex1.1/ERR6003042_1.fastq /srv/public/users/james94/data/ilLasFlex1.1/ERR6003042_2.fastq 21 True True True +ilCyaSemi1.1 /srv/public/users/james94/data/ilCyaSemi1.1/ERR6002620_1.fastq.gz /srv/public/users/james94/data/ilCyaSemi1.1/ERR6002620_2.fastq.gz 21 True True True +ilCyaSemi1.1 /srv/public/users/james94/data/ilCyaSemi1.1/ERR6002621_1.fastq.gz /srv/public/users/james94/data/ilCyaSemi1.1/ERR6002621_2.fastq.gz 21 True True True diff --git a/configuration/exampleSampleSheets/runEval_example.tsv b/configuration/exampleSampleSheets/runEval_example.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11daf29456001015b2eb6cd587a4ae903a3414fd --- /dev/null +++ b/configuration/exampleSampleSheets/runEval_example.tsv @@ -0,0 +1,4 @@ +ID PRI_asm ALT_asm merylDB merylDB_kmer genomeSize +ilVanAtal1.2_HifiDB /srv/public/users/james94/ilVanAtal1.2/GCA_905147765.2_ilVanAtal1.2_genomic.fna.gz None /srv/public/users/james94/ilVanAtal1.2/complete_hifi_ilVanAtal1.2_dB.smrtTrimmed.21.meryl 21 +ilLasFlex1.1_IllumDB /srv/public/users/james94/ilLasFlex1.1/GCA_905147015.1_ilLasFlex1.1_genomic.fna None /srv/public/users/james94/ilLasFlex1.1/complete_Illumina_ilLasFlex1.1_dB.10xTrimmed.AdaptTrimmed.21.meryl 21 +ilCyaSemi1.1_HifiDB /srv/public/users/james94/ilCyaSemi1.1/GCA_905187585.1_ilCyaSemi1.1_genomic.fna.gz None /srv/public/users/james94/ilCyaSemi1.1/complete_hifi_ilCyaSemi1.1_dB.smrtTrimmed.21.meryl 21