From 30b82a57091a4c7f5a4b3e6559d715a31455897a Mon Sep 17 00:00:00 2001
From: james94 <james94@mi.fu-berlin.de>
Date: Thu, 25 Feb 2021 10:38:13 +0100
Subject: [PATCH] simplify testData names
---
configuration/samplesTest.tsv | 8 ++++----
.../{cPicta_R1.fastq.gz => SpeciesX_R1.fastq.gz} | Bin
.../{cPicta_R2.fastq.gz => SpeciesX_R2.fastq.gz} | Bin
...Picta_assembly.fasta => SpeciesX_assembly.fasta} | Bin
...ntina_assembly.fasta => SpeciesY_assembly.fasta} | Bin
...y1_R1.fastq.gz => SpeciesY_library1_R1.fastq.gz} | Bin
...y1_R2.fastq.gz => SpeciesY_library1_R2.fastq.gz} | Bin
...y2_R1.fastq.gz => SpeciesY_library2_R1.fastq.gz} | Bin
...y2_R2.fastq.gz => SpeciesY_library2_R2.fastq.gz} | Bin
9 files changed, 4 insertions(+), 4 deletions(-)
rename testData/{cPicta_R1.fastq.gz => SpeciesX_R1.fastq.gz} (100%)
rename testData/{cPicta_R2.fastq.gz => SpeciesX_R2.fastq.gz} (100%)
rename testData/{cPicta_assembly.fasta => SpeciesX_assembly.fasta} (100%)
rename testData/{cheSerpentina_assembly.fasta => SpeciesY_assembly.fasta} (100%)
rename testData/{cheSerpentina_library1_R1.fastq.gz => SpeciesY_library1_R1.fastq.gz} (100%)
rename testData/{cheSerpentina_library1_R2.fastq.gz => SpeciesY_library1_R2.fastq.gz} (100%)
rename testData/{cheSerpentina_library2_R1.fastq.gz => SpeciesY_library2_R1.fastq.gz} (100%)
rename testData/{cheSerpentina_library2_R2.fastq.gz => SpeciesY_library2_R2.fastq.gz} (100%)
diff --git a/configuration/samplesTest.tsv b/configuration/samplesTest.tsv
index ed266c0..176035a 100644
--- a/configuration/samplesTest.tsv
+++ b/configuration/samplesTest.tsv
@@ -1,4 +1,4 @@
-assemblyName Library_R1 Library_R2 assembly_fasta EstimatedSize(bps)
-ChrysemysPicta /<PathTo>/GEP/testData/cPicta_R1.fastq.gz /<PathTo>/GEP/testData/cPicta_R2.fastq.gz /<PathTo>/GEP/testData/cPicta_assembly.fasta
-ChelydraSerpentina /<PathTo>/GEP/testData/cheSerpentina_library1_R1.fastq.gz /<PathTo>/GEP/testData/cheSerpentina_library1_R2.fastq.gz /<PathTo>/GEP/testData/cheSerpentina_assembly.fasta
-ChelydraSerpentina /<PathTo>/GEP/testData/cheSerpentina_library2_R1.fastq.gz /<PathTo>/GEP/testData/cheSerpentina_library2_R2.fastq.gz /<PathTo>/GEP/testData/cheSerpentina_assembly.fasta
+assemblyName Library_R1 Library_R2 assembly_fasta EstimatedSize(bps)
+SpeciesX /<PathTo>/GEP/testData/SpeciesX_R1.fastq.gz /<PathTo>/GEP/testData/SpeciesX_R2.fastq.gz /<PathTo>/GEP/testData/SpeciesX_assembly.fasta
+SpeciesY /<PathTo>/GEP/testData/SpeciesY_library1_R1.fastq.gz /<PathTo>/GEP/testData/SpeciesY_library1_R2.fastq.gz /<PathTo>/GEP/testData/SpeciesY_assembly.fasta
+SpeciesY /<PathTo>/GEP/testData/SpeciesY_library2_R1.fastq.gz /<PathTo>/GEP/testData/SpeciesY_library2_R2.fastq.gz /<PathTo>/GEP/testData/SpeciesY_assembly.fasta
diff --git a/testData/cPicta_R1.fastq.gz b/testData/SpeciesX_R1.fastq.gz
similarity index 100%
rename from testData/cPicta_R1.fastq.gz
rename to testData/SpeciesX_R1.fastq.gz
diff --git a/testData/cPicta_R2.fastq.gz b/testData/SpeciesX_R2.fastq.gz
similarity index 100%
rename from testData/cPicta_R2.fastq.gz
rename to testData/SpeciesX_R2.fastq.gz
diff --git a/testData/cPicta_assembly.fasta b/testData/SpeciesX_assembly.fasta
similarity index 100%
rename from testData/cPicta_assembly.fasta
rename to testData/SpeciesX_assembly.fasta
diff --git a/testData/cheSerpentina_assembly.fasta b/testData/SpeciesY_assembly.fasta
similarity index 100%
rename from testData/cheSerpentina_assembly.fasta
rename to testData/SpeciesY_assembly.fasta
diff --git a/testData/cheSerpentina_library1_R1.fastq.gz b/testData/SpeciesY_library1_R1.fastq.gz
similarity index 100%
rename from testData/cheSerpentina_library1_R1.fastq.gz
rename to testData/SpeciesY_library1_R1.fastq.gz
diff --git a/testData/cheSerpentina_library1_R2.fastq.gz b/testData/SpeciesY_library1_R2.fastq.gz
similarity index 100%
rename from testData/cheSerpentina_library1_R2.fastq.gz
rename to testData/SpeciesY_library1_R2.fastq.gz
diff --git a/testData/cheSerpentina_library2_R1.fastq.gz b/testData/SpeciesY_library2_R1.fastq.gz
similarity index 100%
rename from testData/cheSerpentina_library2_R1.fastq.gz
rename to testData/SpeciesY_library2_R1.fastq.gz
diff --git a/testData/cheSerpentina_library2_R2.fastq.gz b/testData/SpeciesY_library2_R2.fastq.gz
similarity index 100%
rename from testData/cheSerpentina_library2_R2.fastq.gz
rename to testData/SpeciesY_library2_R2.fastq.gz
--
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