From 313bbca554ed98ac46457fab6c5b455e29840bfc Mon Sep 17 00:00:00 2001
From: james94 <james94@mi.fu-berlin.de>
Date: Wed, 9 Jun 2021 10:26:15 +0200
Subject: [PATCH] new busco Env and fix long-pipeline bug
---
envs/busco_and_assembly.yaml | 2 +-
rules/rulesNew.smk | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/envs/busco_and_assembly.yaml b/envs/busco_and_assembly.yaml
index 38439ac..32aa8c3 100644
--- a/envs/busco_and_assembly.yaml
+++ b/envs/busco_and_assembly.yaml
@@ -4,5 +4,5 @@ channels:
- anaconda
dependencies:
- python=3.8.8
- - busco=5.0.0
+ - busco=5.1.3
- biopython=1.76
diff --git a/rules/rulesNew.smk b/rules/rulesNew.smk
index 7d356ed..ec8b1fe 100644
--- a/rules/rulesNew.smk
+++ b/rules/rulesNew.smk
@@ -21,7 +21,7 @@ rule trimAdapters:
output:
directory(os.path.join(config['Results'],"{sample}/0_qualityControl/01_fastqc"))
threads:
- 8
+
log:
os.path.join(config['Results'], "{sample}" + "/0_qualityControl/logs/{sample}_tGalore.log")
priority:
--
GitLab