From 7209d42bb0535d2107899681b9b18d365753069d Mon Sep 17 00:00:00 2001
From: james94 <james94@mi.fu-berlin.de>
Date: Wed, 9 Jun 2021 11:32:00 +0200
Subject: [PATCH] new busco Env

---
 envs/busco_and_assembly.yaml | 24 ++++++++++++++++++------
 1 file changed, 18 insertions(+), 6 deletions(-)

diff --git a/envs/busco_and_assembly.yaml b/envs/busco_and_assembly.yaml
index 32aa8c3..a915935 100644
--- a/envs/busco_and_assembly.yaml
+++ b/envs/busco_and_assembly.yaml
@@ -1,8 +1,20 @@
 channels:
-  - bioconda
-  - conda-forge
-  - anaconda
+ - conda-forge
+ - bioconda
+ - anaconda
+ - defaults
 dependencies:
-  - python=3.8.8
-  - busco=5.1.3
-  - biopython=1.76
+  - augustus >=3.3
+  - biopython
+  - blast >=2.10.1
+  - fonts-conda-ecosystem
+  - hmmer >=3.1b2
+  - metaeuk
+  - pandas
+  - prodigal
+  - python >=3.3
+  - r-base
+  - r-ggplot2 >=2.2.1
+  - sepp >=4.3.10
+  - wget
+  - busco >= 5.1.3
-- 
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