diff --git a/README.md b/README.md index 7db47cd85e85b2ceb5092ad83cf9631dd51af017..d908fc3968531cfee0de038b00e4bcb10b11722d 100644 --- a/README.md +++ b/README.md @@ -22,12 +22,19 @@ 1. [**Build** meryl k-mer databases](#build-meryl-k-mer-databases) +<br>  +<br> - Requires: WGS sequencing libraries (Pacbio HiFi or Illumina PE short-insert `.fastq`'s) - Output: (`.meryl`) k-mer database +<br> +<br> 2. [Assembly **Evaluation**](#assembly-evaluation) +<br> + +<br> - Requires: (`.meryl`) k-mer databases and corresponding genome assemblies (`.fasta`'s) you wish to evaluate. As well as HiC Libraries as optional input. - Output: - Assembly Stats (L#, N#, Scaffold, contig, etc.) @@ -37,6 +44,7 @@ - genomescope profile - Pretext Map (optional) - **PDF Report aggregating all of the above** +<br> 