From a141874eb12689fb00d7c28739f055f545f20f16 Mon Sep 17 00:00:00 2001 From: james94 <james94@mi.fu-berlin.de> Date: Wed, 24 Feb 2021 16:32:38 +0100 Subject: [PATCH] change testdata names --- configuration/samplesTest.tsv | 8 ++++---- ...R1_subsampled25K.fastq.gz => cPicta_R1.fastq.gz} | Bin ...R2_subsampled25K.fastq.gz => cPicta_R2.fastq.gz} | Bin ...pled10K_assembly.fasta => cPicta_assembly.fasta} | Bin ..._assembly.fasta => cheSerpentina_assembly.fasta} | Bin ....fastq.gz => cheSerpentina_library1_R1.fastq.gz} | Bin ....fastq.gz => cheSerpentina_library1_R2.fastq.gz} | Bin ....fastq.gz => cheSerpentina_library2_R1.fastq.gz} | Bin ....fastq.gz => cheSerpentina_library2_R2.fastq.gz} | Bin 9 files changed, 4 insertions(+), 4 deletions(-) rename testData/{cPicta_Lib1_R1_subsampled25K.fastq.gz => cPicta_R1.fastq.gz} (100%) rename testData/{cPicta_Lib1_R2_subsampled25K.fastq.gz => cPicta_R2.fastq.gz} (100%) rename testData/{cPicta_subsampled10K_assembly.fasta => cPicta_assembly.fasta} (100%) rename testData/{cheSerpentina_subsampled6K_assembly.fasta => cheSerpentina_assembly.fasta} (100%) rename testData/{cheSerpentina_Lib1_R1_subsampled25K.fastq.gz => cheSerpentina_library1_R1.fastq.gz} (100%) rename testData/{cheSerpentina_Lib1_R2_subsampled25K.fastq.gz => cheSerpentina_library1_R2.fastq.gz} (100%) rename testData/{cheSerpentina_Lib2_R1_subsampled15K.fastq.gz => cheSerpentina_library2_R1.fastq.gz} (100%) rename testData/{cheSerpentina_Lib2_R2_subsampled15K.fastq.gz => cheSerpentina_library2_R2.fastq.gz} (100%) diff --git a/configuration/samplesTest.tsv b/configuration/samplesTest.tsv index c3fbaae..ed266c0 100644 --- a/configuration/samplesTest.tsv +++ b/configuration/samplesTest.tsv @@ -1,4 +1,4 @@ -assemblyName Library_R1 Library_R2 assembly_fasta EstimatedSize(bps) -ChrysemysPicta /path/to/genome_evaluation_snakemake/testData/cPicta_Lib1_R1_subsampled25K.fastq.gz /path/to/genome_evaluation_snakemake/testData/cPicta_Lib1_R2_subsampled25K.fastq.gz /path/to/genome_evaluation_snakemake/testData/cPicta_subsampled10K_assembly.fasta -ChelydraSerpentina /path/to/genome_evaluation_snakemake/testData/cheSerpentina_Lib1_R1_subsampled25K.fastq.gz /path/to/genome_evaluation_snakemake/testData/cheSerpentina_Lib1_R2_subsampled25K.fastq.gz /path/to/genome_evaluation_snakemake/testData/cheSerpentina_subsampled6K_assembly.fasta -ChelydraSerpentina /path/to/genome_evaluation_snakemake/testData/cheSerpentina_Lib2_R1_subsampled15K.fastq.gz /path/to/genome_evaluation_snakemake/testData/cheSerpentina_Lib2_R2_subsampled15K.fastq.gz /path/to/genome_evaluation_snakemake/testData/cheSerpentina_subsampled6K_assembly.fasta +assemblyName Library_R1 Library_R2 assembly_fasta EstimatedSize(bps) +ChrysemysPicta /<PathTo>/GEP/testData/cPicta_R1.fastq.gz /<PathTo>/GEP/testData/cPicta_R2.fastq.gz /<PathTo>/GEP/testData/cPicta_assembly.fasta +ChelydraSerpentina /<PathTo>/GEP/testData/cheSerpentina_library1_R1.fastq.gz /<PathTo>/GEP/testData/cheSerpentina_library1_R2.fastq.gz /<PathTo>/GEP/testData/cheSerpentina_assembly.fasta +ChelydraSerpentina /<PathTo>/GEP/testData/cheSerpentina_library2_R1.fastq.gz /<PathTo>/GEP/testData/cheSerpentina_library2_R2.fastq.gz /<PathTo>/GEP/testData/cheSerpentina_assembly.fasta diff --git a/testData/cPicta_Lib1_R1_subsampled25K.fastq.gz b/testData/cPicta_R1.fastq.gz similarity index 100% rename from testData/cPicta_Lib1_R1_subsampled25K.fastq.gz rename to testData/cPicta_R1.fastq.gz diff --git a/testData/cPicta_Lib1_R2_subsampled25K.fastq.gz b/testData/cPicta_R2.fastq.gz similarity index 100% rename from testData/cPicta_Lib1_R2_subsampled25K.fastq.gz rename to testData/cPicta_R2.fastq.gz diff --git a/testData/cPicta_subsampled10K_assembly.fasta b/testData/cPicta_assembly.fasta similarity index 100% rename from testData/cPicta_subsampled10K_assembly.fasta rename to testData/cPicta_assembly.fasta diff --git a/testData/cheSerpentina_subsampled6K_assembly.fasta b/testData/cheSerpentina_assembly.fasta similarity index 100% rename from testData/cheSerpentina_subsampled6K_assembly.fasta rename to testData/cheSerpentina_assembly.fasta diff --git a/testData/cheSerpentina_Lib1_R1_subsampled25K.fastq.gz b/testData/cheSerpentina_library1_R1.fastq.gz similarity index 100% rename from testData/cheSerpentina_Lib1_R1_subsampled25K.fastq.gz rename to testData/cheSerpentina_library1_R1.fastq.gz diff --git a/testData/cheSerpentina_Lib1_R2_subsampled25K.fastq.gz b/testData/cheSerpentina_library1_R2.fastq.gz similarity index 100% rename from testData/cheSerpentina_Lib1_R2_subsampled25K.fastq.gz rename to testData/cheSerpentina_library1_R2.fastq.gz diff --git a/testData/cheSerpentina_Lib2_R1_subsampled15K.fastq.gz b/testData/cheSerpentina_library2_R1.fastq.gz similarity index 100% rename from testData/cheSerpentina_Lib2_R1_subsampled15K.fastq.gz rename to testData/cheSerpentina_library2_R1.fastq.gz diff --git a/testData/cheSerpentina_Lib2_R2_subsampled15K.fastq.gz b/testData/cheSerpentina_library2_R2.fastq.gz similarity index 100% rename from testData/cheSerpentina_Lib2_R2_subsampled15K.fastq.gz rename to testData/cheSerpentina_library2_R2.fastq.gz -- GitLab