From a141874eb12689fb00d7c28739f055f545f20f16 Mon Sep 17 00:00:00 2001
From: james94 <james94@mi.fu-berlin.de>
Date: Wed, 24 Feb 2021 16:32:38 +0100
Subject: [PATCH] change testdata names
---
configuration/samplesTest.tsv | 8 ++++----
...R1_subsampled25K.fastq.gz => cPicta_R1.fastq.gz} | Bin
...R2_subsampled25K.fastq.gz => cPicta_R2.fastq.gz} | Bin
...pled10K_assembly.fasta => cPicta_assembly.fasta} | Bin
..._assembly.fasta => cheSerpentina_assembly.fasta} | Bin
....fastq.gz => cheSerpentina_library1_R1.fastq.gz} | Bin
....fastq.gz => cheSerpentina_library1_R2.fastq.gz} | Bin
....fastq.gz => cheSerpentina_library2_R1.fastq.gz} | Bin
....fastq.gz => cheSerpentina_library2_R2.fastq.gz} | Bin
9 files changed, 4 insertions(+), 4 deletions(-)
rename testData/{cPicta_Lib1_R1_subsampled25K.fastq.gz => cPicta_R1.fastq.gz} (100%)
rename testData/{cPicta_Lib1_R2_subsampled25K.fastq.gz => cPicta_R2.fastq.gz} (100%)
rename testData/{cPicta_subsampled10K_assembly.fasta => cPicta_assembly.fasta} (100%)
rename testData/{cheSerpentina_subsampled6K_assembly.fasta => cheSerpentina_assembly.fasta} (100%)
rename testData/{cheSerpentina_Lib1_R1_subsampled25K.fastq.gz => cheSerpentina_library1_R1.fastq.gz} (100%)
rename testData/{cheSerpentina_Lib1_R2_subsampled25K.fastq.gz => cheSerpentina_library1_R2.fastq.gz} (100%)
rename testData/{cheSerpentina_Lib2_R1_subsampled15K.fastq.gz => cheSerpentina_library2_R1.fastq.gz} (100%)
rename testData/{cheSerpentina_Lib2_R2_subsampled15K.fastq.gz => cheSerpentina_library2_R2.fastq.gz} (100%)
diff --git a/configuration/samplesTest.tsv b/configuration/samplesTest.tsv
index c3fbaae..ed266c0 100644
--- a/configuration/samplesTest.tsv
+++ b/configuration/samplesTest.tsv
@@ -1,4 +1,4 @@
-assemblyName Library_R1 Library_R2 assembly_fasta EstimatedSize(bps)
-ChrysemysPicta /path/to/genome_evaluation_snakemake/testData/cPicta_Lib1_R1_subsampled25K.fastq.gz /path/to/genome_evaluation_snakemake/testData/cPicta_Lib1_R2_subsampled25K.fastq.gz /path/to/genome_evaluation_snakemake/testData/cPicta_subsampled10K_assembly.fasta
-ChelydraSerpentina /path/to/genome_evaluation_snakemake/testData/cheSerpentina_Lib1_R1_subsampled25K.fastq.gz /path/to/genome_evaluation_snakemake/testData/cheSerpentina_Lib1_R2_subsampled25K.fastq.gz /path/to/genome_evaluation_snakemake/testData/cheSerpentina_subsampled6K_assembly.fasta
-ChelydraSerpentina /path/to/genome_evaluation_snakemake/testData/cheSerpentina_Lib2_R1_subsampled15K.fastq.gz /path/to/genome_evaluation_snakemake/testData/cheSerpentina_Lib2_R2_subsampled15K.fastq.gz /path/to/genome_evaluation_snakemake/testData/cheSerpentina_subsampled6K_assembly.fasta
+assemblyName Library_R1 Library_R2 assembly_fasta EstimatedSize(bps)
+ChrysemysPicta /<PathTo>/GEP/testData/cPicta_R1.fastq.gz /<PathTo>/GEP/testData/cPicta_R2.fastq.gz /<PathTo>/GEP/testData/cPicta_assembly.fasta
+ChelydraSerpentina /<PathTo>/GEP/testData/cheSerpentina_library1_R1.fastq.gz /<PathTo>/GEP/testData/cheSerpentina_library1_R2.fastq.gz /<PathTo>/GEP/testData/cheSerpentina_assembly.fasta
+ChelydraSerpentina /<PathTo>/GEP/testData/cheSerpentina_library2_R1.fastq.gz /<PathTo>/GEP/testData/cheSerpentina_library2_R2.fastq.gz /<PathTo>/GEP/testData/cheSerpentina_assembly.fasta
diff --git a/testData/cPicta_Lib1_R1_subsampled25K.fastq.gz b/testData/cPicta_R1.fastq.gz
similarity index 100%
rename from testData/cPicta_Lib1_R1_subsampled25K.fastq.gz
rename to testData/cPicta_R1.fastq.gz
diff --git a/testData/cPicta_Lib1_R2_subsampled25K.fastq.gz b/testData/cPicta_R2.fastq.gz
similarity index 100%
rename from testData/cPicta_Lib1_R2_subsampled25K.fastq.gz
rename to testData/cPicta_R2.fastq.gz
diff --git a/testData/cPicta_subsampled10K_assembly.fasta b/testData/cPicta_assembly.fasta
similarity index 100%
rename from testData/cPicta_subsampled10K_assembly.fasta
rename to testData/cPicta_assembly.fasta
diff --git a/testData/cheSerpentina_subsampled6K_assembly.fasta b/testData/cheSerpentina_assembly.fasta
similarity index 100%
rename from testData/cheSerpentina_subsampled6K_assembly.fasta
rename to testData/cheSerpentina_assembly.fasta
diff --git a/testData/cheSerpentina_Lib1_R1_subsampled25K.fastq.gz b/testData/cheSerpentina_library1_R1.fastq.gz
similarity index 100%
rename from testData/cheSerpentina_Lib1_R1_subsampled25K.fastq.gz
rename to testData/cheSerpentina_library1_R1.fastq.gz
diff --git a/testData/cheSerpentina_Lib1_R2_subsampled25K.fastq.gz b/testData/cheSerpentina_library1_R2.fastq.gz
similarity index 100%
rename from testData/cheSerpentina_Lib1_R2_subsampled25K.fastq.gz
rename to testData/cheSerpentina_library1_R2.fastq.gz
diff --git a/testData/cheSerpentina_Lib2_R1_subsampled15K.fastq.gz b/testData/cheSerpentina_library2_R1.fastq.gz
similarity index 100%
rename from testData/cheSerpentina_Lib2_R1_subsampled15K.fastq.gz
rename to testData/cheSerpentina_library2_R1.fastq.gz
diff --git a/testData/cheSerpentina_Lib2_R2_subsampled15K.fastq.gz b/testData/cheSerpentina_library2_R2.fastq.gz
similarity index 100%
rename from testData/cheSerpentina_Lib2_R2_subsampled15K.fastq.gz
rename to testData/cheSerpentina_library2_R2.fastq.gz
--
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