From a16d8864d21d5284e184ceaf180fbff4acfe2f21 Mon Sep 17 00:00:00 2001
From: james94 <james94@mi.fu-berlin.de>
Date: Fri, 6 May 2022 22:32:17 +1000
Subject: [PATCH] dictionary misnamed
---
Snakefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/Snakefile b/Snakefile
index 018f339..f30a569 100644
--- a/Snakefile
+++ b/Snakefile
@@ -236,7 +236,7 @@ elif set(['ID', 'PRI_asm', 'ALT_asm', 'merylDB', 'merylDB_kmer', 'genomeSize', '
samples=samples.set_index(['ID'])
- testDict=samples.T.to_dict('list')
+ dictSamples=samples.T.to_dict('list')
ruleAllQCFiles=[]
ruleAll=expand(os.path.join(config['Results'],"1_evaluation/{asmID}/06_keyResults/{asmID}_aggregatedResults.tsv"), asmID=list(dictSamples.keys())), os.path.join(config['Results'],"1_evaluation/finalResults/Combined_Results_FULLTABLE.tsv"), os.path.join(config['Results'],"1_evaluation/finalResults/FULL_Report_PDF.pdf"),os.path.join(config['Results'],"1_evaluation/finalResults/FULL_TABLE_PDF.pdf")
--
GitLab