From b4759e1372e1a2f9da168a9e1d90dd70c7c63337 Mon Sep 17 00:00:00 2001
From: james94 <james94@mi.fu-berlin.de>
Date: Wed, 10 Mar 2021 12:31:10 +0100
Subject: [PATCH] meryl script
---
rules/rulesNew.smk | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/rules/rulesNew.smk b/rules/rulesNew.smk
index def377c..5f33143 100644
--- a/rules/rulesNew.smk
+++ b/rules/rulesNew.smk
@@ -163,7 +163,7 @@ rule meryl_R1:
shell:
"""
export OMP_NUM_THREADS={threads}
- (meryl count k={params.kmer} threads={threads} {input.read1} output {output}) &> {log}
+ ({params.script} count k={params.kmer} threads={threads} {input.read1} output {output}) &> {log}
"""
rule meryl_R2:
@@ -188,7 +188,7 @@ rule meryl_R2:
shell:
"""
export OMP_NUM_THREADS={threads}
- (meryl count k={params.kmer} threads={threads} {input.read2} output {output}) &> {log}
+ ({params.script} count k={params.kmer} threads={threads} {input.read2} output {output}) &> {log}
"""
rule meryl:
@@ -217,7 +217,7 @@ rule meryl:
shell:
"""
export OMP_NUM_THREADS={threads}
- (meryl union-sum {input.read1} {input.read2} threads={threads} output {output}) &> {log}
+ ({params.script} union-sum {input.read1} {input.read2} threads={threads} output {output}) &> {log}
"""
--
GitLab