diff --git a/README.md b/README.md index d065baeef9f237b6f10958e4d42210aef036bdd8..c8543a3589cbd95968aca03d38efd2be0a04141e 100644 --- a/README.md +++ b/README.md @@ -16,9 +16,13 @@ --- +## General Workflow of Genome evaluation + -## The Workflow - Two *Modes* + + +## The GEP Workflow - Two *Modes* 1. [**Build** meryl k-mer databases](#build-meryl-k-mer-databases) @@ -347,7 +351,7 @@ The `--contain` flag ensures that the container is completely kept separate from #### EXAMPLE SINGULARITY EXECUTION ``` -snakemake --profile SUBMIT_CONFIG/slurm/ --use-singularity --singularity-args "--bind /scratch/james94,/scratch2/james94 --contain --workdir /scratch/james94/tmp" +snakemake --profile SUBMIT_CONFIG/slurm/ --use-singularity --singularity-args "--bind /scratch/james94,/scratch2/james94 --workdir /scratch/james94/tmp --contain" ``` ### Run in background