From be7d1dafba150a5e2a7211d66500db2caacc8e85 Mon Sep 17 00:00:00 2001 From: james94 <james94@mi.fu-berlin.de> Date: Wed, 1 Jun 2022 09:54:11 +0200 Subject: [PATCH] add general workflow image to READme --- README.md | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index d065bae..c8543a3 100644 --- a/README.md +++ b/README.md @@ -16,9 +16,13 @@ --- +## General Workflow of Genome evaluation + -## The Workflow - Two *Modes* + + +## The GEP Workflow - Two *Modes* 1. [**Build** meryl k-mer databases](#build-meryl-k-mer-databases) @@ -347,7 +351,7 @@ The `--contain` flag ensures that the container is completely kept separate from #### EXAMPLE SINGULARITY EXECUTION ``` -snakemake --profile SUBMIT_CONFIG/slurm/ --use-singularity --singularity-args "--bind /scratch/james94,/scratch2/james94 --contain --workdir /scratch/james94/tmp" +snakemake --profile SUBMIT_CONFIG/slurm/ --use-singularity --singularity-args "--bind /scratch/james94,/scratch2/james94 --workdir /scratch/james94/tmp --contain" ``` ### Run in background -- GitLab