diff --git a/rules/rulesNew.smk b/rules/rulesNew.smk index 0317d6f9fdc6392e17ef3c383b6c9081cf552f6a..05eb53a9d012aad31d1e9fb3729767973af92864 100644 --- a/rules/rulesNew.smk +++ b/rules/rulesNew.smk @@ -129,15 +129,14 @@ rule moveBuscoOutputs: # mvLogs= os.path.join(config['Results'], "{sample}" + "/busco5/logs/"), mvRunBusco= os.path.join(config['Results'], "{sample}" + "/1_busco5/" + "{sample}" + "/run_" + buscoDataBaseName + "_odb10"), mvRunBuscoDest= os.path.join(config['Results'], "{sample}" + "/1_busco5"), - destination= os.path.join(config['Results'], "{sample}" + "/1_busco5/"), - blastDB= os.path.join(config['Results'], "{sample}" + "/1_busco5/" + "{sample}" + "/blast_db") + logs= os.path.join(config['Results'], "{sample}" + "/1_busco5/" + "{sample}" + "/logs") # blastDB= os.path.join(config['Results'], "{sample}" + "/busco5/blast_db") output: file = report(os.path.join(config['Results'], "{sample}" + "/1_busco5/short_summary.specific." + buscoDataBaseName + "_odb10." + "{sample}" + ".txt"), caption="../report/busco.rst", category="Benchmark Universal Single Copy Orthologs", subcategory="{sample}") shell: """ + mv -t {params.mvRunBuscoDest} {params.logs} mv -t {params.mvRunBuscoDest} {params.mvRunBusco} - mv -t {params.mvRunBuscoDest} {params.blastDB} mv {input.buscoResult} {output.file} rm -r {params.rmDir} """