diff --git a/rules/build_hifi.smk b/rules/build_hifi.smk index ff8a3fcf39c9fb1ce0b18fa4e52e7e1520e006e5..bc1ce1c5eb702c77417628dcdecc66f4ae3f0819 100644 --- a/rules/build_hifi.smk +++ b/rules/build_hifi.smk @@ -111,7 +111,7 @@ rule fastqc_hifi: rule multiqc_hifi: input: - lambda wildcards: expand(os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/05_multiqc/{readCounter}.{smrtornot}_fastqc.html"), sample=wildcards.sample, readCounter=d[wildcards.sample], smrtornot=testDict[wildcards.sample][1]) + lambda wildcards: expand(os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/05_multiqc/{readCounter}.{smrtornot}_fastqc.html"), sample=wildcards.sample, readCounter=dictReadCounter[wildcards.sample], smrtornot=dictSamples[wildcards.sample][1]) params: folder2qc=os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/05_multiqc/"), filename="{sample}.{smrtornot}.multiqcReport.html" @@ -150,7 +150,7 @@ rule meryl_hifi_count: rule meryl_hifi_build: input: - lambda wildcards: expand(os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/03_merylDb/{readCounter}_hifi_dB.{smrtornot}.{kmer}.meryl/"), sample=wildcards.sample, readCounter=d[wildcards.sample], kmer=testDict[wildcards.sample][0], smrtornot=testDict[wildcards.sample][1]) + lambda wildcards: expand(os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/03_merylDb/{readCounter}_hifi_dB.{smrtornot}.{kmer}.meryl/"), sample=wildcards.sample, readCounter=dictReadCounter[wildcards.sample], kmer=dictSamples[wildcards.sample][0], smrtornot=dictSamples[wildcards.sample][1]) params: kmer = "{kmer}" threads: