From efbfdbc0c1c506cc9a09a2d1fc4bbf84e75d2f27 Mon Sep 17 00:00:00 2001
From: james94 <james94@mi.fu-berlin.de>
Date: Fri, 6 May 2022 21:25:09 +1000
Subject: [PATCH] dictionary misnamed
---
rules/build_hifi.smk | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/rules/build_hifi.smk b/rules/build_hifi.smk
index ff8a3fc..bc1ce1c 100644
--- a/rules/build_hifi.smk
+++ b/rules/build_hifi.smk
@@ -111,7 +111,7 @@ rule fastqc_hifi:
rule multiqc_hifi:
input:
- lambda wildcards: expand(os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/05_multiqc/{readCounter}.{smrtornot}_fastqc.html"), sample=wildcards.sample, readCounter=d[wildcards.sample], smrtornot=testDict[wildcards.sample][1])
+ lambda wildcards: expand(os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/05_multiqc/{readCounter}.{smrtornot}_fastqc.html"), sample=wildcards.sample, readCounter=dictReadCounter[wildcards.sample], smrtornot=dictSamples[wildcards.sample][1])
params:
folder2qc=os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/05_multiqc/"),
filename="{sample}.{smrtornot}.multiqcReport.html"
@@ -150,7 +150,7 @@ rule meryl_hifi_count:
rule meryl_hifi_build:
input:
- lambda wildcards: expand(os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/03_merylDb/{readCounter}_hifi_dB.{smrtornot}.{kmer}.meryl/"), sample=wildcards.sample, readCounter=d[wildcards.sample], kmer=testDict[wildcards.sample][0], smrtornot=testDict[wildcards.sample][1])
+ lambda wildcards: expand(os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/03_merylDb/{readCounter}_hifi_dB.{smrtornot}.{kmer}.meryl/"), sample=wildcards.sample, readCounter=dictReadCounter[wildcards.sample], kmer=dictSamples[wildcards.sample][0], smrtornot=dictSamples[wildcards.sample][1])
params:
kmer = "{kmer}"
threads:
--
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