Snakemake pipeline for genome evaluation. Evaluation of exisiting assemblies, assembly pipeline intermediate steps and evaliation of genome improvement attempts.
A series of scripts to help creating a catalog of reduced-representation single-copy ortholog sequences (R2SCOs) starting from Stacks2 output. Expected input includes results from the de novo Stack2 pipeline ran using overlapping paired-end reads.
Solver for viscoelastic problems with rate-and-state friction.
See also http://www.math.fu-berlin.de/~pipping for related publications.
Analysis of KZNFs and TEs using PRJNA527986 data
Repository for 2021/22 Introduction to Focus Area class for bioinformatics Master's at FU Berlin. Members: Sara Lopez Ruiz de Vargas, Inga Tummoszeit, Aleksander Muck, Jakub Otreba
Die Hausaufgaben von Statistik I
Pipeline for analyzing TEs and KRAB-ZNFs (Correlation and Differntially expressed genes/TEs)