AppliedSequenceAnalysis

Group 2

Project code for the masters course applied sequence analysis.

Project 1

This project contains the basics of Snakemake and was part of the Snakemake tutorial of the course.

Project 2

This project contains a workflow to process (viral) NGS data including quality control, trimming, decontamination, denovo assembly, assembly polishing, scaffolding, clustering of the assemblies and per base variance analysis.