diff --git a/tutorial/workflow/rules/multiqc.smk b/tutorial/workflow/rules/multiqc.smk index c6e6bd787f67f6326196d7a1e16387a22600b3c8..e455b473eeff9b814b247dedd8e0da07c5efb8ae 100644 --- a/tutorial/workflow/rules/multiqc.smk +++ b/tutorial/workflow/rules/multiqc.smk @@ -1,7 +1,11 @@ rule multiqc: input: - "results/qualimap/", - "results/trimmed_fastqc/" + "results/qualimap/{sample}/qualimapReport.html", + "results/qualimap/{sample}/genome_results.txt", + "results/trimmed_fastqc/{sample}_1_fastqc.html", + "results/trimmed_fastqc/{sample}_2_fastqc.html", + "results/trimmed_fastqc/{sample}_1_fastqc.zip", + "results/trimmed_fastqc/{sample}_2_fastqc.zip" output: "results/multiqc/multiqc.html" shell: