From 9aef96cc5b5c2d0c8f8036f95e403a95bc920b4e Mon Sep 17 00:00:00 2001
From: seehagec01 <seehagec01@fu-berlin.de>
Date: Thu, 24 Mar 2022 22:45:37 +0100
Subject: [PATCH] fix #3
---
tutorial/workflow/rules/multiqc.smk | 8 ++++++--
1 file changed, 6 insertions(+), 2 deletions(-)
diff --git a/tutorial/workflow/rules/multiqc.smk b/tutorial/workflow/rules/multiqc.smk
index c6e6bd7..e455b47 100644
--- a/tutorial/workflow/rules/multiqc.smk
+++ b/tutorial/workflow/rules/multiqc.smk
@@ -1,7 +1,11 @@
rule multiqc:
input:
- "results/qualimap/",
- "results/trimmed_fastqc/"
+ "results/qualimap/{sample}/qualimapReport.html",
+ "results/qualimap/{sample}/genome_results.txt",
+ "results/trimmed_fastqc/{sample}_1_fastqc.html",
+ "results/trimmed_fastqc/{sample}_2_fastqc.html",
+ "results/trimmed_fastqc/{sample}_1_fastqc.zip",
+ "results/trimmed_fastqc/{sample}_2_fastqc.zip"
output:
"results/multiqc/multiqc.html"
shell:
--
GitLab