From ee0e64c3bc61d38c4a07d3b9c2d6f99c9eaa9c17 Mon Sep 17 00:00:00 2001
From: seehagec01 <seehagec01@mi.fu-berlin.de>
Date: Thu, 28 Apr 2022 12:03:39 +0200
Subject: [PATCH] kraken buildworky worky

---
 project/workflow/rules/kraken.smk | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/project/workflow/rules/kraken.smk b/project/workflow/rules/kraken.smk
index d6bb7ac..3d5310a 100644
--- a/project/workflow/rules/kraken.smk
+++ b/project/workflow/rules/kraken.smk
@@ -7,7 +7,7 @@ rule build:
     conda:
         "../envs/yourenv.yaml"
     shell:
-        "kraken2-build --standard --threads {threads} --db {output}" 
+        "kraken2-build --standard --threads {threads} --db db" 
 
 rule report:
     input:
-- 
GitLab