Commits · main · seehagec01 / swp-workflows

19 May, 2022 1 commit
- fix #4 + final workflow · 0d3f9a4c
  seehagec01 authored May 19, 2022
  
  0d3f9a4c
11 May, 2022 2 commits
- added fastp params #4 · d377dd55
  seehagec01 authored May 11, 2022
  
  d377dd55
- added quast + multiqc rules · 225e298c
  seehagec01 authored May 11, 2022
  
  225e298c
10 May, 2022 6 commits
- wd update · c0588869
  seehagec01 authored May 10, 2022
  
  c0588869
- updated snakefile · f0f82661
  seehagec01 authored May 10, 2022
  
  f0f82661
- shiver + seqkit · 51249571
  seehagec01 authored May 10, 2022
  
  51249571
- fix #5 · 4956b079
  seehagec01 authored May 10, 2022
  
  4956b079
- fix #6 #7 · 936e9826
  seehagec01 authored May 10, 2022
  
  936e9826
- fix #8 · 04462ef9
  seehagec01 authored May 10, 2022
  
  04462ef9
05 May, 2022 2 commits
- added kraken report for trimmed and unmapped files · 92c6e37b
  seehagec01 authored May 05, 2022
  
  92c6e37b
- updated log files · dcda03e0
  seehagec01 authored May 05, 2022
  
  dcda03e0
04 May, 2022 1 commit
- iva producing contigs yay · c2dc4c98
  seehagec01 authored May 04, 2022
  
  c2dc4c98
02 May, 2022 1 commit
- updated fastp · efa22dc3
  seehagec01 authored May 02, 2022
  
  efa22dc3
28 Apr, 2022 3 commits
- IVA produziert contigs für 3/6 samples · 2714dfbc
  seehagec01 authored Apr 28, 2022
  
  2714dfbc
- push vor branchwechsel · 5888ef2f
  seehagec01 authored Apr 28, 2022
  
  5888ef2f
- kraken buildworky worky · ee0e64c3
  seehagec01 authored Apr 28, 2022
  
  ee0e64c3
27 Apr, 2022 2 commits
- Kraken db, Iva · 57e1a319
  Anna Mauti Gelbe authored Apr 27, 2022
  
  57e1a319
- kraken kinda working · 06c9e00f
  seehagec01 authored Apr 27, 2022
  
  06c9e00f
26 Apr, 2022 5 commits
- yaml · 8047f854
  Anna Mauti Gelbe authored Apr 26, 2022
  
  8047f854
- working bowtie2 + fastq · 488c0b2d
  seehagec01 authored Apr 26, 2022
  
  488c0b2d
- sambam · 59cfb869
  seehagec01 authored Apr 26, 2022
  
  59cfb869
- Merge branch 'main' of https://git.imp.fu-berlin.de/seehagec01/swp-workflows · 2b5d39eb
  seehagec01 authored Apr 26, 2022
  
  2b5d39eb
- bowtie wrapper + simple kraken · 14a0711b
  seehagec01 authored Apr 26, 2022
  
  14a0711b
25 Apr, 2022 1 commit
- samtools · a05ab632
  Anna Mauti Gelbe authored Apr 25, 2022
  
  a05ab632
24 Apr, 2022 1 commit
- trying kraken · 3c8dd928
  seehagec01 authored Apr 24, 2022
  
  3c8dd928
23 Apr, 2022 1 commit
- yourenv bedtools hinzu, ivaschen hinzu; snakefile, samtools rule fastq mit ERR4082860 funktioniert · 984d3ea1
  Anna Mauti Gelbe authored Apr 23, 2022
  
  984d3ea1
21 Apr, 2022 1 commit
- bowtie2, samtools gemacht · 4e02e906
  Anna Mauti Gelbe authored Apr 21, 2022
  
  4e02e906
20 Apr, 2022 1 commit
- fastp rule · c13a1b99
  Anna Mauti Gelbe authored Apr 20, 2022
  
  c13a1b99
18 Apr, 2022 2 commits
- fastp rule · 1dd9357b
  seehagec01 authored Apr 18, 2022
  
  1dd9357b
- setup · 984deffa
  seehagec01 authored Apr 18, 2022
  
  984deffa
24 Mar, 2022 1 commit
- fix #3 · 9aef96cc
  seehagec01 authored Mar 24, 2022
  
  9aef96cc
22 Mar, 2022 2 commits
- changed dir in fastqc · 6838ba1c
  seehagec01 authored Mar 22, 2022
  
  6838ba1c
- fix #3 · 106d81a8
  seehagec01 authored Mar 22, 2022
  
  106d81a8
21 Mar, 2022 3 commits
- added qualimap · 4d0cbae9
  seehagec01 authored Mar 21, 2022
  
  4d0cbae9
- fix#2 · afac6484
  seehagec01 authored Mar 21, 2022
  
  afac6484
- fix#1 · 33a80bfa
  seehagec01 authored Mar 21, 2022
  
  33a80bfa
18 Mar, 2022 4 commits
- final · 86498c5b
  seehagec01 authored Mar 18, 2022
  
  86498c5b
- setup · 71ab335d
  seehagec01 authored Mar 18, 2022
  
  71ab335d
- setup · 57b33a92
  seehagec01 authored Mar 18, 2022
  
  57b33a92
- Initial commit · 27fa1e4a
  seehagec01 authored Mar 18, 2022
  
  27fa1e4a