cleaned up code

added paper v0.5 will be updated

JavaAkkaFuCoin/thesis_latex_template/5_appendix.aux

+\relax 
+\providecommand\hyper@newdestlabel[2]{}
+\@setckpt{5_appendix}{
+\setcounter{page}{6}
+\setcounter{equation}{0}
+\setcounter{enumi}{0}
+\setcounter{enumii}{0}
+\setcounter{enumiii}{0}
+\setcounter{enumiv}{0}
+\setcounter{footnote}{0}
+\setcounter{mpfootnote}{0}
+\setcounter{part}{0}
+\setcounter{section}{7}
+\setcounter{subsection}{0}
+\setcounter{subsubsection}{0}
+\setcounter{paragraph}{0}
+\setcounter{subparagraph}{0}
+\setcounter{figure}{0}
+\setcounter{table}{0}
+\setcounter{vrcnt}{0}
+\setcounter{lstnumber}{15}
+\setcounter{Item}{0}
+\setcounter{Hfootnote}{0}
+\setcounter{bookmark@seq@number}{7}
+\setcounter{lstlisting}{0}
+\setcounter{section@level}{1}
+}

JavaAkkaFuCoin/thesis_latex_template/bibliography.bib

+% This file was created with JabRef 2.5.
+% Encoding: Cp1252
+
+@INPROCEEDINGS{DjeOezSal07,
+  author = {Riad Djemili and Christopher Oezbek and Stephan Salinger},
+  title = {{Saros: Eine Eclipse-Erweiterung zur verteilten Paarprogrammierung.}},
+  booktitle = {Software Engineering (Workshops)},
+  year = {2007},
+  editor = {Wolf-Gideon Bleek and Henning Schwentner and Heinz Zllighoven},
+  volume = {106},
+  series = {LNI},
+  pages = {317-320},
+  publisher = {GI},
+  crossref = {conf/se/2007w},
+  date = {2007-09-20},
+  interhash = {6a3ff0533f42dc6bf9e882ddad44c477},
+  intrahash = {4b914fb7bf85efa120c9b0d76261b666},
+  isbn = {978-3-88579-200-0},
+  url = {http://www.inf.fu-berlin.de/inst/ag-se/pubs/saros-2007.pdf}
+}
+
+@INPROCEEDINGS{CocWil00,
+  author = {Alistair Cockburn and Laurie Williams},
+  title = {{The Costs and Benefits of Pair Programming}},
+  booktitle = {eXtreme Programming and Flexible Processes in Software Engineering
+	XP2000},
+  year = {2000},
+  pages = {223--247},
+  publisher = {Addison-Wesley}
+}
+
+@MASTERSTHESIS{Dje06,
+  author = {R. Djemili},
+  title = {{Entwicklung einer Eclipse-Erweiterung zur Realisierung und Protokollierungverteilter
+	Paarprogrammierung}},
+  school = {Freie Universitt Berlin, Inst. fr Informatik},
+  year = {2006}
+}
+
+@MISC{FowlerM04b,
+  author = {Fowler, Martin},
+  title = {{Inversion of Control Containers and the Dependency Injection pattern}},
+  howpublished = {\url{http://www.martinfowler.com/articles/injection.html}},
+  month = jan,
+  year = {2004},
+  url = {\url{http://www.martinfowler.com/articles/injection.html}}
+}
+
+@BOOK{GOF95,
+  title = {Design patterns: elements of reusable object-oriented software},
+  publisher = {Addison-Wesley Professional},
+  year = {1995},
+  author = {Gamma, Erich and Helm, Richard and Johnson, Ralph and Vlissides,
+	John},
+  citeulike-article-id = {430671},
+  keywords = {semwiki},
+  posted-at = {2005-12-08 12:16:10},
+  priority = {0}
+}
+
+@MISC{DPPII,
+  author = {Bjrn Gustavs},
+  title = {{Weiterentwicklung des Eclipse-Plug-Ins Saros zur Verteilten Paarprogrammierung}},
+  howpublished = {\url{http://www.inf.fu-berlin.de/inst/ag-se/theses/Gustavs_Saros_DPPII.pdf}},
+  month = oct,
+  year = {2007}
+}
+
+@MASTERSTHESIS{DPPIV,
+  author = {Christoph Jacob},
+  title = {{Weiterentwicklung eines Werkzeuges zur verteilten, kollaborativen
+	Softwareentwicklung}},
+  school = {Freie Universitt Berlin},
+  year = {2009}
+}
+
+@ELECTRONIC{Plonka,
+  author = {Laura Plonka},
+  title = {{Analysis of Professional Pair Programmers}},
+  howpublished = {\url{https://www.inf.fu-berlin.de/w/SE/AnalysisOfProfessionalPairProgrammers}},
+  organization = {Freie Universitt Berlin},
+  url = {\url{https://www.inf.fu-berlin.de/w/SE/AnalysisOfProfessionalPairProgrammers}},
+  timestamp = {2009.07.31}
+}
+
+@MASTERSTHESIS{DPPIII,
+  author = {Oliver Rieger},
+  title = {{Weiterentwicklung einer Eclipse-Erweiterung fr verteilte Paar-Programmierung
+	im Hinblick auf Kollaboration und Kommunikation}},
+  school = {Freie Universitt Berlin},
+  year = {2008}
+}
+
+@MISC{DPPV,
+  author = {Marc Rintsch},
+  title = {{Agile Weiterentwicklung eines Software-Werkzeuges zur verteilten
+	Paarprogrammierung}},
+  howpublished = {\url{https://www.mi.fu-berlin.de/wiki/pub/Main/MarcRintsch/studienarbeit.pdf}},
+  month = jun,
+  year = {2009},
+  url = {\url{https://www.mi.fu-berlin.de/wiki/pub/Main/MarcRintsch/studienarbeit.pdf}}
+}
+
+@MISC{Rosen,
+  author = {Edna Rosen},
+  title = {{Bewertung verteilter Paarprogrammierung im betrieblichen Umfeld}},
+  howpublished = {\url{https://www.inf.fu-berlin.de/w/SE/ThesisDPPManagement}},
+  year = {2009},
+  timestamp = {2009.07.30}
+}
+

JavaAkkaFuCoin/thesis_latex_template/declaration.aux

+\relax 
+\providecommand\hyper@newdestlabel[2]{}
+\@setckpt{declaration}{
+\setcounter{page}{2}
+\setcounter{equation}{0}
+\setcounter{enumi}{0}
+\setcounter{enumii}{0}
+\setcounter{enumiii}{0}
+\setcounter{enumiv}{0}
+\setcounter{footnote}{0}
+\setcounter{mpfootnote}{0}
+\setcounter{part}{0}
+\setcounter{section}{0}
+\setcounter{subsection}{0}
+\setcounter{subsubsection}{0}
+\setcounter{paragraph}{0}
+\setcounter{subparagraph}{0}
+\setcounter{figure}{0}
+\setcounter{table}{0}
+\setcounter{vrcnt}{0}
+\setcounter{lstnumber}{1}
+\setcounter{Item}{0}
+\setcounter{Hfootnote}{0}
+\setcounter{bookmark@seq@number}{0}
+\setcounter{lstlisting}{0}
+\setcounter{section@level}{0}
+}

JavaAkkaFuCoin/thesis_latex_template/declaration.tex

+\subsection*{Eidesstattliche Erklärung}
+
+Ich versichere hiermit an Eides Statt, dass diese Arbeit von niemand anderem als meiner Person verfasst worden ist. Alle verwendeten Hilfsmittel wie Berichte, Bücher, Internetseiten oder ähnliches sind im Literaturverzeichnis angegeben, Zitate aus fremden Arbeiten sind als solche kenntlich gemacht. Die Arbeit wurde bisher in gleicher oder ähnlicher Form keiner anderen Prüfungskommission vorgelegt und auch nicht veröffentlicht.
+\parbig
+<Datum> \\\\
+<Name>
\ No newline at end of file

JavaAkkaFuCoin/thesis_latex_template/thesis.aux

+\relax 
+\providecommand\hyper@newdestlabel[2]{}
+\catcode `"\active 
+\providecommand\HyperFirstAtBeginDocument{\AtBeginDocument}
+\HyperFirstAtBeginDocument{\ifx\hyper@anchor\@undefined
+\global\let\oldcontentsline\contentsline
+\gdef\contentsline#1#2#3#4{\oldcontentsline{#1}{#2}{#3}}
+\global\let\oldnewlabel\newlabel
+\gdef\newlabel#1#2{\newlabelxx{#1}#2}
+\gdef\newlabelxx#1#2#3#4#5#6{\oldnewlabel{#1}{{#2}{#3}}}
+\AtEndDocument{\ifx\hyper@anchor\@undefined
+\let\contentsline\oldcontentsline
+\let\newlabel\oldnewlabel
+\fi}
+\fi}
+\global\let\hyper@last\relax 
+\gdef\HyperFirstAtBeginDocument#1{#1}
+\providecommand\HyField@AuxAddToFields[1]{}
+\providecommand\HyField@AuxAddToCoFields[2]{}
+\select@language{ngerman}
+\@writefile{toc}{\select@language{ngerman}}
+\@writefile{lof}{\select@language{ngerman}}
+\@writefile{lot}{\select@language{ngerman}}
+\@input{1_introduction.aux}
+\@input{2_fundamentals.aux}
+\@input{3_main.aux}
+\@input{4_conclusion.aux}
+\@input{5_appendix.aux}
+\bibstyle{alpha}
+\bibdata{bibliography}

JavaAkkaFuCoin/thesis_latex_template/thesis.out

+\BOOKMARK [1][-]{section.1}{Introduction}{}% 1
+\BOOKMARK [1][-]{section.2}{ActionInvokeSentMoney}{}% 2
+\BOOKMARK [1][-]{section.3}{ActionInvokeDistributedCommitedTransfer}{}% 3
+\BOOKMARK [1][-]{section.4}{ActionPrepareDistributedCommitedTransfer}{}% 4
+\BOOKMARK [1][-]{section.5}{ActionPrepareDistributedCommitedTransferAnswer}{}% 5
+\BOOKMARK [1][-]{section.6}{ActionCommitDistributedCommitedTransfer}{}% 6
+\BOOKMARK [1][-]{section.7}{ActionUpdateQueue}{}% 7

JavaAkkaFuCoin/thesis_latex_template/thesis.tex

+\documentclass[11pt,a4paper,ngerman]{article}
+\usepackage[T1]{fontenc} 
+\usepackage[latin1]{inputenc} 
+\usepackage{babel}
+\usepackage{ae}
+%
+\usepackage{fancyref}
+\usepackage{fancyhdr} 
+\usepackage{xcolor}
+\usepackage{url}
+\usepackage{makeidx}
+\usepackage{listings}
+%
+% PDF settings
+\usepackage[pdftex]{graphicx}
+\usepackage[pdfstartview=FitH,pdftitle={<Titel>},pdfauthor={<Name>}, colorlinks=true, linktocpage]{hyperref}
+% colorlinks=false, pdfborder={0 0 0} = keine farbigen Links
+%
+% Header and Footer Style
+\pagestyle{fancy}
+\fancyhead{}
+\fancyhead[R]{\slshape <Name>}
+\fancyhead[L]{\slshape\nouppercase{\rightmark}}
+\fancyfoot{}
+\fancyfoot[C]{\thepage}
+\renewcommand{\headrulewidth}{0pt}
+\renewcommand{\sectionmark}[1]{\markright{\thesection\ #1}} 
+%
+% No identation
+\setlength\headheight{15pt}
+\setlength\parindent{0pt} 
+%
+% Custom commands
+\newcommand\zb{z.\,B.\ }
+\renewcommand\dh{d.\,h.\ }
+\newcommand\parbig{\par\bigskip}
+\newcommand\parmed{\par\medskip}
+\newcommand{\mailto}[1]{\href{mailto:#1}{#1}}
+%
+% Java Code Listing Style
+\definecolor{darkblue}{rgb}{0,0,.6}
+\definecolor{darkgreen}{rgb}{0,0.5,0}
+\definecolor{darkred}{rgb}{0.5,0,0}
+\lstset{language=Java, basicstyle=\ttfamily\small\upshape, commentstyle=\color{darkgreen}\sffamily, keywordstyle=\color{darkblue}\rmfamily\bfseries, breaklines=true,tabsize=2,xleftmargin=3mm, xrightmargin=3mm,numbers=none,frame=single,stringstyle=\color{darkred},
+showstringspaces=false}
+%
+% Titel and author 
+\title{\includegraphics[width=0.6\textwidth]{pictures/logo}\\
+{\normalsize Seminararbeit am Institut fr Informatik der Freien Universitt Berlin, Arbeitsgruppe Technische Informatik}\\[6ex]
+Two-Phase-Commit}
+
+\author{Michael Kmoch, Yuri Lewash\\
+{\normalsize Matrikelnummer: 4289388, 4293181 }\\
+{\normalsize \mailto{michael.kmoch@inf.fu-berlin.de}, \mailto{yuri.lewash@inf.fu-berlin.de}}\\\\
+{\normalsize Betreuer: Simon Schmidt}\\
+{\normalsize Eingereicht bei: Katinka Wolter}}
+
+\date{Berlin, 23.07.2015}
+
+
+\begin{document}
+
+\begin{titlepage}
+
+\pagenumbering{alph}
+\maketitle
+\thispagestyle{empty}
+
+\vfill{}
+
+\begin{abstract}
+Abstract
+\end{abstract}
+
+\vfill{}
+
+\end{titlepage}
+
+\pagestyle{empty}
+\clearpage\pagenumbering{roman}
+
+\tableofcontents
+
+\clearpage\pagenumbering{arabic}
+\pagestyle{fancy}
+\setcounter{page}{1}
+\include{1_introduction}
+\include{2_fundamentals}      
+\include{3_main}            
+\include{4_conclusion}
+\include{5_appendix}      
+
+\bibliographystyle{alpha}
+\bibliography{bibliography}
+
+\end{document}

JavaAkkaFuCoin/thesis_latex_template/thesis.tex~

+\documentclass[11pt,a4paper,ngerman]{article}
+\usepackage[T1]{fontenc} 
+\usepackage[latin1]{inputenc} 
+\usepackage{babel}
+\usepackage{ae}
+%
+\usepackage{fancyref}
+\usepackage{fancyhdr} 
+\usepackage{xcolor}
+\usepackage{url}
+\usepackage{makeidx}
+\usepackage{listings}
+%
+% PDF settings
+\usepackage[pdftex]{graphicx}
+\usepackage[pdfstartview=FitH,pdftitle={<Titel>},pdfauthor={<Name>}, colorlinks=true, linktocpage]{hyperref}
+% colorlinks=false, pdfborder={0 0 0} = keine farbigen Links
+%
+% Header and Footer Style
+\pagestyle{fancy}
+\fancyhead{}
+\fancyhead[R]{\slshape <Name>}
+\fancyhead[L]{\slshape\nouppercase{\rightmark}}
+\fancyfoot{}
+\fancyfoot[C]{\thepage}
+\renewcommand{\headrulewidth}{0pt}
+\renewcommand{\sectionmark}[1]{\markright{\thesection\ #1}} 
+%
+% No identation
+\setlength\headheight{15pt}
+\setlength\parindent{0pt} 
+%
+% Custom commands
+\newcommand\zb{z.\,B.\ }
+\renewcommand\dh{d.\,h.\ }
+\newcommand\parbig{\par\bigskip}
+\newcommand\parmed{\par\medskip}
+\newcommand{\mailto}[1]{\href{mailto:#1}{#1}}
+%
+% Java Code Listing Style
+\definecolor{darkblue}{rgb}{0,0,.6}
+\definecolor{darkgreen}{rgb}{0,0.5,0}
+\definecolor{darkred}{rgb}{0.5,0,0}
+\lstset{language=Java, basicstyle=\ttfamily\small\upshape, commentstyle=\color{darkgreen}\sffamily, keywordstyle=\color{darkblue}\rmfamily\bfseries, breaklines=true,tabsize=2,xleftmargin=3mm, xrightmargin=3mm,numbers=none,frame=single,stringstyle=\color{darkred},
+showstringspaces=false}
+%
+% Titel and author 
+\title{\includegraphics[width=0.6\textwidth]{pictures/logo}\\
+{\normalsize <X-Arbeit> am Institut fr Informatik der Freien Universitt Berlin, Arbeitsgruppe Software Engineering}\\[6ex]
+<Titel>}
+
+\author{<Name>\\
+{\normalsize Matrikelnummer: }\\
+{\normalsize \mailto{example@mail.de}}\\\\
+{\normalsize Betreuer: }\\
+{\normalsize Eingereicht bei: }}
+
+\date{Berlin, <Datum>}
+
+
+\begin{document}
+
+\begin{titlepage}
+
+\pagenumbering{alph}
+\maketitle
+\thispagestyle{empty}
+
+\vfill{}
+
+\begin{abstract}
+Abstract
+\end{abstract}
+
+\vfill{}
+
+\end{titlepage}
+
+\pagestyle{empty}
+\clearpage\pagenumbering{roman}
+
+\include{declaration}
+
+\tableofcontents
+
+\clearpage\pagenumbering{arabic}
+\pagestyle{fancy}
+\setcounter{page}{1}
+\include{1_introduction}      
+\include{2_fundamentals}      
+\include{3_main}            
+\include{4_conclusion}
+\include{5_appendix}      
+
+\bibliographystyle{alpha}
+\bibliography{bibliography}
+
+\end{document}

JavaAkkaFuCoin/thesis_latex_template/thesis.toc

+\select@language {ngerman}
+\contentsline {section}{\numberline {1}Introduction}{1}{section.1}
+\contentsline {section}{\numberline {2}ActionInvokeSentMoney}{1}{section.2}
+\contentsline {section}{\numberline {3}ActionInvokeDistributedCommitedTransfer}{2}{section.3}
+\contentsline {section}{\numberline {4}ActionPrepareDistributedCommitedTransfer}{3}{section.4}
+\contentsline {section}{\numberline {5}ActionPrepareDistributedCommitedTransferAnswer}{3}{section.5}
+\contentsline {section}{\numberline {6}ActionCommitDistributedCommitedTransfer}{4}{section.6}
+\contentsline {section}{\numberline {7}ActionUpdateQueue}{5}{section.7}