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Commit 01fb10ed authored by yunusek77's avatar yunusek77
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Update 5 files 

- /Cytoscape/.gitkeep
- /Cytoscape/cytoscape_result.jpeg
- /Cytoscape/cytoscape.xlsx
- /Cytoscape/extract_mrna_names_from_mirna.R
- /Cytoscape/miRNA_mRNA_network.sif
parent 24a860bc
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Cytoscape/.gitkeep deleted 100644 → 0
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Cytoscape/cytoscape.xlsx deleted 100644 → 0
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Cytoscape/cytoscape_result.jpeg deleted 100644 → 0
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Cytoscape/cytoscape_result.jpeg

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Cytoscape/extract_mrna_names_from_mirna.R deleted 100644 → 0
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library(readxl)
df <- read_excel("C:/Users/Emre/Desktop/multimir_results_cyto.xlsx")
mrna <- read_excel("C:/Users/Emre/Desktop/mRNAs.xlsx")
mrna_genes <- mrna$external_gene_name
filtered_df <- df[df$target_symbol %in% mrna_genes | duplicated(df$target_symbol) %in% mrna_genes, ]
print(filtered_df)
library(writexl)
output_file <- ("C:/Users/Emre/Desktop/cytoscape.xlsx")
write_xlsx(filtered_df, output_file)
Cytoscape/miRNA_mRNA_network.sif deleted 100644 → 0
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hsa-miR-455-3p validated EMP1
hsa-miR-455-3p validated IGFBP3
hsa-miR-188-5p validated AQP3
hsa-miR-193a-5p validated EMP1
hsa-miR-193a-5p validated COL1A1
hsa-miR-582-5p validated TIAM1
hsa-miR-582-5p validated GALNT1
hsa-miR-18b-5p validated SIM2
hsa-miR-18b-5p validated LYPD3
hsa-miR-18b-5p validated GALNT1
hsa-miR-130b-3p validated COL1A1
hsa-miR-18a-5p validated SIM2
hsa-miR-18a-5p validated LYPD3
hsa-miR-18a-5p validated GALNT1
hsa-miR-199a-3p validated ERCC3
hsa-miR-199a-3p validated EMP1
hsa-miR-199a-3p validated ENTPD6
hsa-miR-199a-3p validated HSPD1
hsa-miR-296-5p validated EMP1
hsa-miR-199a-5p validated ENTPD6
hsa-miR-199a-5p validated COL1A1
hsa-miR-19b-3p validated IGFBP3
hsa-miR-200c-3p validated CRISP3
hsa-miR-200c-3p validated AIM2
hsa-miR-200c-3p validated FLG
hsa-miR-200c-3p validated EMP1
hsa-miR-200c-3p validated FSCN1
hsa-miR-99a-5p validated HOPX
hsa-miR-99a-5p validated MMP10
hsa-miR-205-5p validated HOPX
hsa-miR-205-5p validated TRIP13
hsa-miR-205-5p validated MCM2
hsa-miR-205-5p validated GALNT1
hsa-miR-205-5p validated ALDH9A1
hsa-miR-27b-3p validated LYPD3
hsa-miR-27b-3p validated TIAM1
hsa-miR-27b-3p validated GALNT1
hsa-miR-27b-3p validated FSCN1
hsa-miR-27b-3p validated IGFBP3
hsa-miR-27b-3p validated ALDH9A1
hsa-miR-27b-3p validated HSPD1
hsa-miR-103a-3p validated TRIP13
hsa-miR-103a-3p validated MCM2
hsa-miR-103a-3p validated ERCC3
hsa-miR-103a-3p validated EMP1
hsa-miR-103a-3p validated EMP1
hsa-miR-103a-3p validated GALNT1
hsa-miR-103a-3p validated FSCN1
hsa-miR-103a-3p validated IGFBP3
hsa-miR-103a-3p validated COL1A1
hsa-miR-19a-3p validated MYH10
hsa-miR-19a-3p validated SIM2
hsa-miR-19a-3p validated IGFBP3
hsa-miR-3162-5p validated ALDH9A1
hsa-miR-1915-3p validated LYPD3
hsa-miR-1915-3p validated CES2
hsa-miR-1915-3p validated FSCN1
hsa-miR-144-3p validated HSPD1
hsa-miR-144-3p validated TSPAN6
hsa-miR-30b-5p validated GPX3
hsa-miR-30b-5p validated ERCC3
hsa-miR-30b-5p validated GALNT1
hsa-miR-30b-5p validated GALNT1
hsa-miR-193b-3p validated TRIP13
hsa-miR-193b-3p validated TSPAN6
hsa-miR-193b-3p validated MCM2
hsa-miR-193b-3p validated ALDH9A1
hsa-miR-193b-3p validated RUVBL1
hsa-miR-193b-3p validated TRIP13
hsa-miR-193b-3p validated RUVBL1
hsa-miR-197-3p validated HSPB8
hsa-miR-197-3p validated MCM2
hsa-miR-197-3p validated EMP1
hsa-miR-197-3p validated GALNT1
hsa-miR-197-3p validated COL1A1
hsa-miR-197-3p validated HSPD1
hsa-miR-197-3p validated RUVBL1
hsa-miR-197-3p validated MYH10
hsa-miR-197-3p validated RUVBL1
hsa-miR-197-3p validated HSPD1
hsa-miR-185-5p validated AQP3
hsa-miR-185-5p validated COL5A2
hsa-miR-185-5p validated COL1A1
hsa-miR-185-5p validated AQP3
hsa-miR-185-5p validated ALOX12
hsa-miR-185-5p validated ALDH9A1
hsa-miR-185-5p validated COL1A1
hsa-miR-185-5p validated COL1A1
hsa-miR-100-5p validated HOPX
hsa-miR-100-5p validated HOPX
hsa-miR-100-5p validated MMP10
hsa-miR-100-5p validated MMP10
hsa-miR-100-5p validated FSCN1
hsa-miR-100-5p validated ALDH9A1
hsa-miR-30c-5p validated GPX3
hsa-miR-30c-5p validated ERCC3
hsa-miR-30c-5p validated GALNT1
hsa-miR-30c-5p validated GALNT1
hsa-miR-195-5p validated HSPBAP1
hsa-miR-195-5p validated TRIP13
hsa-miR-195-5p validated MCM2
hsa-miR-195-5p validated EMP1
hsa-miR-195-5p validated ENTPD6
hsa-miR-195-5p validated GALNT1
hsa-miR-195-5p validated IGFBP3
hsa-miR-195-5p validated IGFBP3
hsa-miR-195-5p validated ALOX12
hsa-miR-195-5p validated ENTPD6
hsa-miR-195-5p validated GALNT1
hsa-miR-195-5p validated GALNT1
hsa-miR-26b-5p validated MYH10
hsa-miR-26b-5p validated TMPRSS11E
hsa-miR-26b-5p validated CH25H
hsa-miR-26b-5p validated RUVBL1
hsa-miR-26b-5p validated SERPINB2
hsa-miR-26b-5p validated MMP10
hsa-miR-26b-5p validated GALNT1
hsa-miR-26b-5p validated IGFBP3
hsa-miR-26b-5p validated ALDH9A1
hsa-miR-26b-5p validated HSPD1
hsa-miR-26b-5p validated RUVBL1
hsa-miR-26b-5p validated TMPRSS11E
hsa-miR-26b-5p validated CES2
hsa-miR-26b-5p validated TMPRSS11E
hsa-miR-26b-5p validated CH25H
hsa-miR-26b-5p validated RUVBL1
hsa-miR-26b-5p validated SERPINB2
hsa-miR-26b-5p validated MMP10
hsa-miR-26b-5p validated HSPD1
hsa-miR-29a-3p validated ANO1
hsa-miR-29a-3p validated EMP1
hsa-miR-29a-3p validated COL5A2
hsa-miR-29a-3p validated FSCN1
hsa-miR-29a-3p validated IGFBP3
hsa-miR-29a-3p validated COL1A1
hsa-miR-29a-3p validated HSPD1
hsa-miR-29a-3p validated EMP1
hsa-miR-29a-3p validated COL5A2
hsa-miR-29a-3p validated FSCN1
hsa-miR-424-5p validated NDRG2
hsa-miR-424-5p validated ENTPD6
hsa-miR-424-5p validated GALNT1
hsa-miR-424-5p validated IGFBP3
hsa-miR-424-5p validated GALNT1
hsa-miR-424-5p validated GALNT1
hsa-miR-27a-3p validated CRISP3
hsa-miR-27a-3p validated NDRG2
hsa-miR-27a-3p validated TMPRSS11E
hsa-miR-27a-3p validated TMPRSS11E
hsa-miR-27a-3p validated LYPD3
hsa-miR-27a-3p validated TIAM1
hsa-miR-27a-3p validated SPRR3
hsa-miR-27a-3p validated COL5A2
hsa-miR-27a-3p validated GALNT1
hsa-miR-27a-3p validated FSCN1
hsa-miR-27a-3p validated FSCN1
hsa-miR-27a-3p validated IGFBP3
hsa-miR-27a-3p validated IGFBP3
hsa-miR-27a-3p validated ALDH9A1
hsa-miR-27a-3p validated COL1A1
hsa-miR-27a-3p validated COL1A1
hsa-miR-27a-3p validated HSPD1
hsa-miR-27a-3p validated ALDH9A1
hsa-miR-20b-5p validated ATP6V1D
hsa-miR-20b-5p validated IGFBP3
hsa-miR-20b-5p validated TSPAN6
hsa-miR-20b-5p validated ALDH9A1
hsa-miR-93-5p validated ATP6V1D
hsa-miR-93-5p validated AQP3
hsa-miR-93-5p validated MCM2
hsa-miR-93-5p validated IGFBP3
hsa-miR-93-5p validated TSPAN6
hsa-miR-93-5p validated ALDH9A1
hsa-miR-200b-3p validated ANO1
hsa-miR-200b-3p validated EMP1
hsa-miR-200b-3p validated ENTPD6
hsa-miR-200b-3p validated IGFBP3
hsa-miR-200b-3p validated FSCN1
hsa-miR-30a-5p validated MYH10
hsa-miR-30a-5p validated GPX3
hsa-miR-30a-5p validated RUVBL1
hsa-miR-30a-5p validated ERCC3
hsa-miR-30a-5p validated GALNT1
hsa-miR-30a-5p validated FSCN1
hsa-miR-30a-5p validated GALNT1
hsa-miR-30a-5p validated GALNT1
hsa-miR-30a-5p validated FSCN1
hsa-miR-20a-5p validated GPX3
hsa-miR-20a-5p validated CLIC3
hsa-miR-20a-5p validated MCM2
hsa-miR-20a-5p validated EMP1
hsa-miR-20a-5p validated COL5A2
hsa-miR-20a-5p validated ENTPD6
hsa-miR-20a-5p validated FSCN1
hsa-miR-20a-5p validated IGFBP3
hsa-miR-20a-5p validated IGFBP3
hsa-miR-20a-5p validated ALDH9A1
hsa-miR-20a-5p validated TSPAN6
hsa-miR-20a-5p validated ALDH9A1
hsa-miR-21-5p validated ATP6V1D
hsa-miR-21-5p validated MYH10
hsa-miR-21-5p validated ZNF185
hsa-miR-21-5p validated SERPINB2
hsa-miR-21-5p validated COL5A2
hsa-miR-21-5p validated IGFBP3
hsa-miR-21-5p validated TIAM1
hsa-miR-21-5p validated TIAM1
hsa-miR-21-5p validated TIAM1
hsa-miR-21-5p validated COL5A2
hsa-miR-181b-5p validated MYH10
hsa-miR-181b-5p validated ALDH9A1
hsa-miR-181b-5p validated ALDH9A1
hsa-miR-29c-3p validated AIM2
hsa-miR-29c-3p validated SPRR3
hsa-miR-29c-3p validated PPP1R3C
hsa-miR-29c-3p validated EMP1
hsa-miR-29c-3p validated COL5A2
hsa-miR-29c-3p validated GALNT1
hsa-miR-29c-3p validated FSCN1
hsa-miR-29c-3p validated IGFBP3
hsa-miR-29c-3p validated COL1A1
hsa-miR-29c-3p validated HSPD1
hsa-miR-29c-3p validated TIAM1
hsa-miR-29c-3p validated EMP1
hsa-miR-29c-3p validated COL5A2
hsa-miR-29c-3p validated FSCN1
hsa-miR-29c-3p validated COL1A1
hsa-miR-29c-3p validated COL1A1
hsa-miR-29c-3p validated COL1A1
hsa-miR-29c-3p validated COL1A1
hsa-miR-29c-3p validated COL1A1
hsa-miR-29c-3p validated COL1A1
hsa-miR-29c-3p validated COL1A1
hsa-miR-29c-3p validated COL1A1
hsa-miR-145-5p validated NDRG2
hsa-miR-145-5p validated TSPAN6
hsa-miR-145-5p validated COL5A2
hsa-miR-145-5p validated ENTPD6
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated IL1RN
hsa-miR-145-5p validated COL1A1
hsa-miR-145-5p validated NDRG2
hsa-miR-145-5p validated TSPAN6
hsa-miR-145-5p validated TSPAN6
hsa-miR-145-5p validated MCM2
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
hsa-miR-145-5p validated FSCN1
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