Upload New File

Data_Annotation/GO_enrichment/GO_enrichment.R

+library(clusterProfiler)
+library(org.Hs.eg.db)
+library(AnnotationDbi)
+
+data <- read.table("C:/Users/Emre/Desktop/ensembl.txt", sep = "\n", header = TRUE)
+
+genes_to_test <- data$ENSEMBLE_ID
+
+GO_results <- enrichGO(gene = genes_to_test, OrgDb = "org.Hs.eg.db", keyType = "ENSEMBL", ont = "BP")
+
+as.data.frame(GO_results)
+
+fit <- plot(barplot(GO_results, showCategory = 15))
+fit
+
+
+GO_results2 <- enrichGO(gene = genes_to_test, OrgDb = "org.Hs.eg.db", keyType = "ENSEMBL", ont = "MF")
+
+as.data.frame(GO_results2)
+
+fit2 <- plot(barplot(GO_results2, showCategory = 15))
+fit2
+
+
+GO_results3 <- enrichGO(gene = genes_to_test, OrgDb = "org.Hs.eg.db", keyType = "ENSEMBL", ont = "CC")
+
+as.data.frame(GO_results3)
+
+fit3 <- plot(barplot(GO_results3, showCategory = 15))
+fit3
+