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Deseq2: contains the scripts that we used for DGEA with deseq2 package in R.<br /> Deseq2: contains the scripts that we used for DGEA with deseq2 package in R.<br />
Limma: contains the scripts that we used for DGEA with limma package in R.<br /> Limma: contains the scripts that we used for DGEA with limma package in R.<br />
Merging: contains scripts that we used for merging the mRNA data after DGEA with limma. Merging: contains scripts that we used for merging the mRNA data after DGEA with limma.<br />
We used following GEO Datasets in total: We used following GEO Datasets in total:<br />
miRNA: miRNA: <br />
GSE43732: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE43732 GSE43732: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE43732 <br />
GSE6188: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6188 (discarded) GSE6188: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6188 (discarded)<br />
GSE55857: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE55857 (discarded) GSE55857: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE55857 (discarded)<br />
mRNA: mRNA:<br />
GSE70409: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70409 GSE70409: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70409 <br />
GSE29001: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE29001 GSE29001: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE29001 <br />
GSE20347: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20347 GSE20347: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20347 <br />
GSE23400: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE23400 GSE23400: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE23400 <br />
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