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aakan96
Datascience-SS2023
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f3008380
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1 year ago
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aakan96
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Deseq2: contains the scripts that we used for DGEA with deseq2 package in R.
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/>
Deseq2: contains the scripts that we used for DGEA with deseq2 package in R.
<br
/>
Limma: contains the scripts that we used for DGEA with limma package in R.
<br
/>
Limma: contains the scripts that we used for DGEA with limma package in R.
<br
/>
Merging: contains scripts that we used for merging the mRNA data after DGEA with limma.
Merging: contains scripts that we used for merging the mRNA data after DGEA with limma.
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/>
We used following GEO Datasets in total:
We used following GEO Datasets in total:
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miRNA:
miRNA:
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GSE43732: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE43732
GSE43732: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE43732
<br
/>
GSE6188: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6188 (discarded)
GSE6188: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6188 (discarded)
<br
/>
GSE55857: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE55857 (discarded)
GSE55857: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE55857 (discarded)
<br
/>
mRNA:
mRNA:
<br
/>
GSE70409: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70409
GSE70409: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70409
<br
/>
GSE29001: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE29001
GSE29001: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE29001
<br
/>
GSE20347: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20347
GSE20347: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20347
<br
/>
GSE23400: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE23400
GSE23400: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE23400
<br
/>
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