- /02_MultiMIR/MultiMiR.R
- /02_MultiMIR/README.md
- /02_MultiMIR/multimir_results_final.xlsx
- /02_MultiMIR/multimir.Rmd
- /02_MultiMIR/multimir.pdf
- /02_MultiMIR/multimir_results.xlsx

- /02_MultiMIR/MultiMiR.R
- /04_Cytoscape/extract_mrna_names_from_mirna.R

- /02_MultiMIR/MultiMiR.R
- /02_MultiMIR/miRNAmRNA.xlsx

- /Differential Expression Analysis/Deseq2/mRNA/GSE20347​ mRNA​.R
- /Differential Expression Analysis/Deseq2/mRNA/GSE29001​ mRNA​.R
- /Differential Expression Analysis/Deseq2/mRNA/GSE70409​ mRNA​.R
- /Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R
- /Differential Expression Analysis/Limma/mRNA/GSE20347.R
- /Differential Expression Analysis/Limma/mRNA/GSE29001.R
- /Differential Expression Analysis/Limma/mRNA/GSE70409.R
- /Differential Expression Analysis/Limma/miRNA/GSE43732.R
- /Differential Expression Analysis/Limma/miRNA/GSE55857.R
- /Differential Expression Analysis/Limma/miRNA/GSE6188.R
- /Differential Expression Analysis/merging/.gitkeep
- /MultiMIR/multimir_results_final.xlsx
- /Data Annotation/GO biological function.png
- /Data Annotation/GO cellular component.png
- /Data Annotation/GO molecular function.png
- /Data Annotation/GO_enrichment.R
- /Data Annotation/biomart_for_annotation.R
- /Data Annotation/go.csv
- /Data Annotation/mrna.csv
- /Machine Learning/.gitkeep
- /Machine Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb
- /Machine Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb
- /Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb
- /Machine Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb
- /Machine Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb
- /Machine Learning/mRNA_DS_preprocessed_training_data.csv
- /Cytoscape/cytoscape.xlsx
- /Cytoscape/extract_mrna_names_from_mirna.R
- /Cytoscape/miRNAmRNA.xlsx
- /Cytoscape/multimir_results.xlsx
- /Cytoscape/new.png
- /Survival Analysis/.gitkeep
- /Survival Analysis/document.pdf
- /01_Differential Expression Analysis/Deseq2/mRNA/GSE70409​ mRNA​.R
- /01_Differential Expression Analysis/Deseq2/mRNA/GSE29001​ mRNA​.R
- /01_Differential Expression Analysis/Deseq2/mRNA/GSE20347​ mRNA​.R
- /01_Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R
- /01_Differential Expression Analysis/Limma/mRNA/GSE29001.R
- /01_Differential Expression Analysis/Limma/mRNA/GSE70409.R
- /01_Differential Expression Analysis/Limma/mRNA/GSE20347.R
- /01_Differential Expression Analysis/Limma/miRNA/GSE55857.R
- /01_Differential Expression Analysis/Limma/miRNA/GSE6188.R
- /01_Differential Expression Analysis/Limma/miRNA/GSE43732.R
- /01_Differential Expression Analysis/merging/.gitkeep
- /02_MultiMIR/multimir_results_final.xlsx
- /05_Data Annotation/GO biological function.png
- /05_Data Annotation/biomart_for_annotation.R
- /05_Data Annotation/GO cellular component.png
- /05_Data Annotation/go.csv
- /05_Data Annotation/GO molecular function.png
- /05_Data Annotation/GO_enrichment.R
- /05_Data Annotation/mrna.csv
- /03_Machine Learning/.gitkeep
- /03_Machine Learning/mRNA_DS_preprocessed_training_data.csv
- /03_Machine Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb
- /03_Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb
- /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb
- /03_Machine Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb
- /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb
- /04_Cytoscape/extract_mrna_names_from_mirna.R
- /04_Cytoscape/miRNAmRNA.xlsx
- /04_Cytoscape/cytoscape.xlsx
- /04_Cytoscape/new.png
- /04_Cytoscape/multimir_results.xlsx
- /06_Survival Analysis/.gitkeep
- /06_Survival Analysis/document.pdf