- Jul 21, 2023
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aakan96 authored
- /01_Differential_Expression_Analysis/merging/merge_rm.pdf - /01_Differential_Expression_Analysis/merging/merge_main.html - /01_Differential_Expression_Analysis/merging/merge_main.Rmd
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aakan96 authored
- /01_Differential_Expression_Analysis/merging/merge_rm.pdf - /01_Differential_Expression_Analysis/merging/merge_main.R
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aakan96 authored
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aakan96 authored
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aakan96 authored
- /01_Differential_Expression_Analysis/merging/data_for_merging/GSE43732.top.table.tsv - /01_Differential_Expression_Analysis/merging/data_for_merging/GSE20347.top.table.tsv - /01_Differential_Expression_Analysis/merging/data_for_merging/GSE23400.top.table.tsv - /01_Differential_Expression_Analysis/merging/data_for_merging/GSE29001.top.table.tsv - /01_Differential_Expression_Analysis/merging/data_for_merging/GSE70409.top.table.tsv
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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- Jul 20, 2023
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
- /01_Differential Expression Analysis/Deseq2/mRNA/GSE20347 mRNA.R - /01_Differential Expression Analysis/Deseq2/mRNA/GSE29001 mRNA.R - /01_Differential Expression Analysis/Deseq2/mRNA/GSE70409 mRNA.R - /01_Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /01_Differential Expression Analysis/Limma/mRNA/GSE20347.R - /01_Differential Expression Analysis/Limma/mRNA/GSE29001.R - /01_Differential Expression Analysis/Limma/mRNA/GSE70409.R - /01_Differential Expression Analysis/Limma/miRNA/GSE43732.R - /01_Differential Expression Analysis/Limma/miRNA/GSE55857.R - /01_Differential Expression Analysis/Limma/miRNA/GSE6188.R - /01_Differential Expression Analysis/merging/.gitkeep - /03_Machine Learning/.gitkeep - /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb - /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb - /03_Machine Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/mRNA_DS_preprocessed_training_data.csv - /05_Data Annotation/GO biological function.png - /05_Data Annotation/GO cellular component.png - /05_Data Annotation/GO molecular function.png - /05_Data Annotation/GO_enrichment.R - /05_Data Annotation/biomart_for_annotation.R - /05_Data Annotation/go.csv - /05_Data Annotation/mrna.csv - /06_Survival Analysis/.gitkeep - /06_Survival Analysis/document.pdf - /01_Differential_Expression_Analysis/Deseq2/mRNA/GSE20347 mRNA.R - /01_Differential_Expression_Analysis/Deseq2/mRNA/GSE70409 mRNA.R - /01_Differential_Expression_Analysis/Deseq2/mRNA/GSE29001 mRNA.R - /01_Differential_Expression_Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /01_Differential_Expression_Analysis/Limma/mRNA/GSE29001.R - /01_Differential_Expression_Analysis/Limma/mRNA/GSE20347.R - /01_Differential_Expression_Analysis/Limma/mRNA/GSE70409.R - /01_Differential_Expression_Analysis/Limma/miRNA/GSE6188.R - /01_Differential_Expression_Analysis/Limma/miRNA/GSE43732.R - /01_Differential_Expression_Analysis/Limma/miRNA/GSE55857.R - /01_Differential_Expression_Analysis/merging/.gitkeep - /03_Machine_Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine_Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine_Learning/.gitkeep - /03_Machine_Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb - /03_Machine_Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb - /03_Machine_Learning/DS_mRNA_limma_dataset_svm_F.ipynb - /03_Machine_Learning/mRNA_DS_preprocessed_training_data.csv - /05_Data_Annotation/GO cellular component.png - /05_Data_Annotation/go.csv - /05_Data_Annotation/GO biological function.png - /05_Data_Annotation/GO_enrichment.R - /05_Data_Annotation/GO molecular function.png - /05_Data_Annotation/biomart_for_annotation.R - /05_Data_Annotation/mrna.csv - /06_Survival_Analysis/.gitkeep - /06_Survival_Analysis/document.pdf
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