Initial commit

CMakeLists.txt

+cmake_minimum_required(VERSION 2.8.12)
+project(binary-allen-cahn CXX)
+
+if(NOT (dune-common_DIR OR dune-common_ROOT OR
+      "${CMAKE_PREFIX_PATH}" MATCHES ".*dune-common.*"))
+    string(REPLACE  ${CMAKE_PROJECT_NAME} dune-common dune-common_DIR
+      ${PROJECT_BINARY_DIR})
+endif()
+
+#find dune-common and set the module path
+find_package(dune-common REQUIRED)
+list(APPEND CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/cmake/modules"
+  ${dune-common_MODULE_PATH})
+
+#include the dune macros
+include(DuneMacros)
+
+# start a dune project with information from dune.module
+dune_project()
+dune_enable_all_packages()
+add_subdirectory("src")
+add_subdirectory("dune")
+add_subdirectory("doc")
+add_subdirectory("cmake/modules")
+
+# finalize the dune project, e.g. generating config.h etc.
+finalize_dune_project(GENERATE_CONFIG_H_CMAKE)

README

+Preparing the Sources
+=========================
+
+Additional to the software mentioned in README you'll need the
+following programs installed on your system:
+
+  cmake >= 2.8.12
+
+Getting started
+---------------
+
+If these preliminaries are met, you should run
+
+  dunecontrol all
+
+which will find all installed dune modules as well as all dune modules
+(not installed) which sources reside in a subdirectory of the current
+directory. Note that if dune is not installed properly you will either
+have to add the directory where the dunecontrol script resides (probably
+./dune-common/bin) to your path or specify the relative path of the script.
+
+Most probably you'll have to provide additional information to dunecontrol
+(e. g. compilers, configure options) and/or make options.
+
+The most convenient way is to use options files in this case. The files
+define four variables:
+
+CMAKE_FLAGS      flags passed to cmake (during configure)
+MAKE_FLAGS       flags passed to make
+
+An example options file might look like this:
+
+#use this options to configure and make if no other options are given
+CMAKE_FLAGS=" \
+-DCMAKE_CXX_COMPILER=g++-4.9 \
+-DCMAKE_CXX_FLAGS='-Wall -pedantic' \
+-DCMAKE_INSTALL_PREFIX=/install/path" #Force g++-4.9 and set compiler flags
+MAKE_FLAGS=install #Per default run make install instead of simply make
+
+If you save this information into example.opts you can pass the opts file to
+dunecontrol via the --opts option, e. g.
+
+  dunecontrol --opts=example.opts all
+
+More info
+---------
+
+See
+
+     dunecontrol --help
+
+for further options.
+
+
+The full build system is described in the dune-common/doc/buildsystem (Git version) or under share/doc/dune-common/buildsystem if you installed DUNE!

binary-allen-cahn.pc.in

+prefix=@prefix@
+exec_prefix=@exec_prefix@
+libdir=@libdir@
+includedir=@includedir@
+CXX=@CXX@
+CC=@CC@
+DEPENDENCIES=@REQUIRES@
+
+Name: @PACKAGE_NAME@
+Version: @VERSION@
+Description: binary-allen-cahn module
+URL: http://dune-project.org/
+Requires: dune-common dune-geometry dune-uggrid dune-grid dune-localfunctions dune-istl dune-typetree dune-functions dune-matrix-vector dune-fufem dune-solvers dune-tnnmg
+Libs: -L${libdir}
+Cflags: -I${includedir}

cmake/modules/BinaryAllenCahnMacros.cmake

+# File for module specific CMake tests.

cmake/modules/CMakeLists.txt

+set(modules "BinaryAllenCahnMacros.cmake")
+
+install(FILES ${modules} DESTINATION ${DUNE_INSTALL_MODULEDIR})

config.h.cmake

+/* begin binary-allen-cahn
+   put the definitions for config.h specific to
+   your project here. Everything above will be
+   overwritten
+*/
+
+/* begin private */
+/* Name of package */
+#define PACKAGE "@DUNE_MOD_NAME@"
+
+/* Define to the address where bug reports for this package should be sent. */
+#define PACKAGE_BUGREPORT "@DUNE_MAINTAINER@"
+
+/* Define to the full name of this package. */
+#define PACKAGE_NAME "@DUNE_MOD_NAME@"
+
+/* Define to the full name and version of this package. */
+#define PACKAGE_STRING "@DUNE_MOD_NAME@ @DUNE_MOD_VERSION@"
+
+/* Define to the one symbol short name of this package. */
+#define PACKAGE_TARNAME "@DUNE_MOD_NAME@"
+
+/* Define to the home page for this package. */
+#define PACKAGE_URL "@DUNE_MOD_URL@"
+
+/* Define to the version of this package. */
+#define PACKAGE_VERSION "@DUNE_MOD_VERSION@"
+
+/* end private */
+
+/* Define to the version of binary-allen-cahn */
+#define BINARY_ALLEN_CAHN_VERSION "@BINARY_ALLEN_CAHN_VERSION@"
+
+/* Define to the major version of binary-allen-cahn */
+#define BINARY_ALLEN_CAHN_VERSION_MAJOR @BINARY_ALLEN_CAHN_VERSION_MAJOR@
+
+/* Define to the minor version of binary-allen-cahn */
+#define BINARY_ALLEN_CAHN_VERSION_MINOR @BINARY_ALLEN_CAHN_VERSION_MINOR@
+
+/* Define to the revision of binary-allen-cahn */
+#define BINARY_ALLEN_CAHN_VERSION_REVISION @BINARY_ALLEN_CAHN_VERSION_REVISION@
+
+/* end binary-allen-cahn
+   Everything below here will be overwritten
+*/

doc/CMakeLists.txt

+add_subdirectory("doxygen")

doc/doxygen/CMakeLists.txt

+# shortcut for creating the Doxyfile.in and Doxyfile
+add_doxygen_target()

doc/doxygen/Doxylocal

+# This file contains local changes to the doxygen configuration
+# please us '+=' to add file/directories to the lists
+
+# The INPUT tag can be used to specify the files and/or directories that contain
+# documented source files. You may enter file names like "myfile.cpp" or
+# directories like "/usr/src/myproject". Separate the files or directories
+# with spaces.
+
+INPUT                 += @top_srcdir@/dune/
+# see e.g. dune-grid for the examples of mainpage and modules
+# INPUT                 += @srcdir@/mainpage \
+#                          @srcdir@/modules
+
+# The EXCLUDE tag can be used to specify files and/or directories that should
+# excluded from the INPUT source files. This way you can easily exclude a
+# subdirectory from a directory tree whose root is specified with the INPUT tag.
+
+# EXCLUDE               += @top_srcdir@/dune/binary-allen-cahn/test
+
+# The EXAMPLE_PATH tag can be used to specify one or more files or
+# directories that contain example code fragments that are included (see
+# the \include command).
+
+# EXAMPLE_PATH          += @top_srcdir@/src
+
+# The IMAGE_PATH tag can be used to specify one or more files or
+# directories that contain image that are included in the documentation (see
+# the \image command).
+
+# IMAGE_PATH            += @top_srcdir@/dune/binary-allen-cahn/pics

dune.module

+################################
+# Dune module information file #
+################################
+
+#Name of the module
+Module: binary-allen-cahn
+Version: 0.1
+Maintainer: graeser@mi.fu-berlin.de
+#depending on
+Depends: dune-common dune-geometry dune-uggrid dune-grid dune-localfunctions dune-istl dune-typetree dune-functions dune-matrix-vector dune-fufem dune-solvers dune-tnnmg

dune/CMakeLists.txt

+add_subdirectory(binary-allen-cahn)

dune/binary-allen-cahn/CMakeLists.txt

+#install headers
+install(FILES binary-allen-cahn.hh DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dune/binary-allen-cahn)

dune/binary-allen-cahn/binary-allen-cahn.hh

+#ifndef BINARY_ALLEN_CAHN_HH
+#define BINARY_ALLEN_CAHN_HH
+
+// add your classes here
+
+#endif // BINARY_ALLEN_CAHN_HH

src/CMakeLists.txt

+add_executable("binary-allen-cahn" binary-allen-cahn.cc)
+target_link_dune_default_libraries("binary-allen-cahn")

src/binary-allen-cahn.cc

+// -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 2 -*-
+// vi: set et ts=4 sw=2 sts=2:
+
+#ifdef HAVE_CONFIG_H
+# include "config.h"
+#endif
+#include <iostream>
+#include <dune/common/parallel/mpihelper.hh> // An initializer of MPI
+#include <dune/common/exceptions.hh> // We use exceptions
+
+int main(int argc, char** argv)
+{
+  try{
+    // Maybe initialize MPI
+    Dune::MPIHelper& helper = Dune::MPIHelper::instance(argc, argv);
+    std::cout << "Hello World! This is binary-allen-cahn." << std::endl;
+    if(Dune::MPIHelper::isFake)
+      std::cout<< "This is a sequential program." << std::endl;
+    else
+      std::cout<<"I am rank "<<helper.rank()<<" of "<<helper.size()
+        <<" processes!"<<std::endl;
+    return 0;
+  }
+  catch (Dune::Exception &e){
+    std::cerr << "Dune reported error: " << e << std::endl;
+  }
+  catch (...){
+    std::cerr << "Unknown exception thrown!" << std::endl;
+  }
+}