Update makePDF_indivMD.py

scripts/report/makePDF_indivMD.py

@@ -139,6 +139,9 @@ if params_asm2provided:
 		lines = scoresOnlyFile.readlines()
 		lines = [line.rstrip() for line in lines]
 
+		percentage_data = re.split(r'[,\[\]]', lines[0])
+		percentage_values = {item.split(':')[0]: item.split(':')[1].split('[')[0] for item in percentage_data if len(item) > 0}
+
 		percentages = []
 		numbers = []
 		# Iterate through the data starting from the second line
@@ -163,13 +166,18 @@ if params_asm2provided:
 		})
 
 		busco_table = pd.merge(busco_table, busco_table_2, on='Metric')
-		print (busco_table)
+		print(busco_table)
 
 
 else:
 	gfastats_asm2=""
 	busco_asm2=""
 
+# Change the percentage values to 100.0 for 'Total searched groups'
+busco_table.loc[busco_table['Metric'] == 'Total searched groups', 'asm1 %'] = 100.0
+if 'asm2 %' in busco_table.columns:
+    busco_table.loc[busco_table['Metric'] == 'Total searched groups', 'asm2 %'] = 100.0
+
 output_file=snakemake.output[0]
 
 with open(output_file, 'w') as outFile:
@@ -271,4 +279,4 @@ with open(output_file, 'w') as outFile:
 		print("\\", file=outFile)
 		print("\\Large", file=outFile)
 		print("", file=outFile)
-
+		
\ No newline at end of file