fix includes and cmake project

CMakeLists.txt

biotracker/BioTrackerApp.h

biotracker/CMakeLists.txt

biotracker/TrackingAlgorithm.h

biotracker/serialization/SerializationData.h

biotracker/settings/Settings.h

biotracker/src/BioTrackerApp.cpp

biotracker/src/CMakeLists.txt

biotracker/src/ImageStream.cpp

biotracker/src/ImageStream.h

biotracker/src/Registry.cpp

biotracker/src/Registry.h

biotracker/src/TrackingThread.cpp

biotracker/src/TrackingThread.h

biotracker/src/serialization/ObjectModel.cpp

biotracker/src/serialization/TrackedObject.cpp

biotracker/src/settings/Settings.cpp

biotracker/src/util/CMakeLists.txt

biotracker/src/util/CvHelper.cpp

biotracker/src/util/imagePreProcessor/ImagePreProcessor.cpp