Add jupyterhub image

.gitlab-ci.yml

@@ -8,6 +8,7 @@ build ubuntu:
   script:
     - image_name="${CI_REGISTRY}/${CI_PROJECT_PATH,,}"
     - podman build --pull -t "${image_name}/ubuntu" ubuntu
+    - podman build -t "${image_name}/jupyterhub" jupyterhub
 
 deploy ubuntu:
   stage: deploy
@@ -19,5 +20,6 @@ deploy ubuntu:
   script:
     - image_name="${CI_REGISTRY}/${CI_PROJECT_PATH,,}"
     - podman push "${image_name}/ubuntu"
+    - podman push "${image_name}/jupyterhub"
   after_script:
     - podman logout "${CI_REGISTRY}"

jupyterhub/Dockerfile

+# SPDX-License-Identifier: Apache-2.0
+FROM git.imp.fu-berlin.de:5000/bioroboticslab/robofish/docker/ubuntu
+
+LABEL maintainer="Moritz Maxeiner <moritz.maxeiner@fu-berlin.de>"
+LABEL authors="Moritz Maxeiner <moritz.maxeiner@fu-berlin.de>"
+
+RUN apt-get update && \
+    apt-get install -y \
+        curl && \
+    apt-get clean
+
+RUN curl -sL https://deb.nodesource.com/setup_10.x | bash - && \
+    apt-get update && \
+    apt-get install -y \
+        openssh-server \
+        nodejs \
+        node-gyp \
+        libssl1.0-dev \
+        openbox \
+        openjdk-11-jre-headless && \
+    apt-get clean
+
+COPY --from=git.imp.fu-berlin.de:5000/bioroboticslab/robofish/docker/tensorflow:1.15.3 /opt/tensorflow/build/tensorflow-1.15.3-cp37-cp37m-linux_x86_64.whl /opt/tensorflow/tensorflow-1.15.3-cp37-cp37m-linux_x86_64.whl
+
+RUN python3.7 -m pip --no-cache-dir install \
+        jupyterlab \
+	jupyterhub \
+	&& \
+    python3.7 -m jupyter labextension install \
+        @jupyter-widgets/jupyterlab-manager \
+        jupyter-matplotlib && \
+    python3.7 -m jupyter serverextension enable --sys-prefix --py jupyterlab && \
+    python3.7 -m jupyter labextension install \
+        jupyter-webrtc \
+        ipyvolume \
+        jupyter-threejs
+
+RUN mkdir -p ~/.venv && \
+    python3.7 -m venv ~/.venv/robofish && \
+    . ~/.venv/robofish/bin/activate && \
+    pip --no-cache-dir install --upgrade pip==20.1.1 && \
+    pip --no-cache-dir install --upgrade setuptools==49.1.0 && \
+    pip install /opt/tensorflow/tensorflow-1.15.3-cp37-cp37m-linux_x86_64.whl && \
+    pip --no-cache-dir install \
+        wheel \
+        scipy \
+        matplotlib \
+        pandas \
+        tables \
+        ipympl \
+        ipywebrtc \
+        ipyvolume \
+        seaborn \
+        JPype1 \
+        PySide2 \
+        ipykernel \
+        mxnet-cu101==1.6.0 \
+        && \
+    ipython kernel install --user --name=robofish
+
+COPY jupyter_notebook_config.py /root/.jupyter/
+COPY themes.jupyterlab-settings /root/.jupyter/lab/user-settings/@jupyterlab/apputils-extension/
+COPY commands.jupyterlab-settings /root/.jupyter/lab/user-settings/@jupyterlab/codemirror-extension/
+
+RUN chmod -x /etc/update-motd.d/*
+
+WORKDIR "/root"
+CMD [ "jupyterhub-singleuser" ]

jupyterhub/commands.jupyterlab-settings

+{
+    "theme": "jupyter"
+}
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jupyterhub/jupyter_notebook_config.py

+c.NotebookApp.open_browser = False
+c.NotebookApp.token = ''
+c.NotebookApp.allow_root = True
+c.NotebookApp.terminado_settings = { 'shell_command': ['/bin/bash', '-l'] }
+c.MultiKernelManager.default_kernel_name = 'robofish'

jupyterhub/themes.jupyterlab-settings

+{
+    "theme": "JupyterLab Dark"
+}
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