Import docker configuration from RF_ai

Dockerfile

+FROM nvidia/cuda:9.2-cudnn7-devel-ubuntu18.04
+
+LABEL maintainer="Moritz Maxeiner <moritz.maxeiner@fu-berlin.de>"
+LABEL authors="Moritz Maxeiner <moritz.maxeiner@fu-berlin.de>"
+
+ENV TZ=Europe/Berlin
+ENV DEBIAN_FRONTEND=noninteractive
+
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends \
+        software-properties-common
+
+RUN add-apt-repository ppa:ubuntu-toolchain-r/test -y
+
+RUN apt-get update
+
+RUN echo $TZ > /etc/timezone && \
+    apt-get install -y tzdata && \
+    rm /etc/localtime && \
+    ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && \
+    dpkg-reconfigure -f noninteractive tzdata
+
+RUN apt-get install -y --no-install-recommends \
+        build-essential \
+        pkg-config \
+        gcc-8 g++-8 \
+        ninja-build \
+        curl \
+        git \
+        libboost-all-dev
+
+RUN apt-get install -y \
+        python3 \
+        python3-dev \
+        python3-pip \
+        python3-setuptools \
+        python3-distutils
+
+RUN cd /tmp && \
+    curl -sSLO https://cmake.org/files/v3.12/cmake-3.12.0.tar.gz && \
+    tar -xf cmake-3.12.0.tar.gz && \
+    cd cmake-3.12.0 && \
+    ./configure --prefix=/usr/local && \
+    make install -j$(nproc --all) && \
+    cd .. && \
+    rm -rf cmake-3.12.0*
+
+RUN apt-get install -y \
+        libopenblas-dev \
+        liblapack-dev \
+        libopencv-dev \
+        libcurl4-openssl-dev \
+        libzmq3-dev \
+        libprotobuf-dev \
+        protobuf-compiler \
+        python-opencv \
+        libgfortran3 \
+        graphviz
+
+RUN python3.6 -m pip --no-cache-dir install \
+        graphviz \
+        nose \
+        nose-timer \
+        pylint \
+        requests \
+        Pillow
+
+RUN cd /opt && \
+    curl -sSLO https://github.com/apache/incubator-mxnet/releases/download/1.2.1/apache-mxnet-src-1.2.1-incubating.tar.gz && \
+    tar -xf apache-mxnet-src-1.2.1-incubating.tar.gz && \
+    rm -f apache-mxnet-src-1.2.1-incubating.tar.gz && \
+    mv apache-mxnet-src-1.2.1-incubating mxnet-1.2.1 && \
+    cd mxnet-1.2.1 && \
+    cmake -Bbuild -H. \
+        -DCMAKE_CXX_STANDARD=14 -DUSE_CXX14_IF_AVAILABLE=ON \
+        -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr/local \
+        -DUSE_CUDA=ON -DUSE_CUDNN=ON -DUSE_NCCL=ON \
+        -DUSE_OPENCV=ON -DUSE_OPENMP=ON \
+        -DUSE_LAPACK=ON -DUSE_MKL_IF_AVAILABLE=OFF \
+        -DUSE_DIST_KVSTORE=ON \
+        -DUSE_CPP_PACKAGE=ON \
+        -DUSE_SIGNAL_HANDLER=ON \
+        -DENABLE_CUDA_RTC=ON \
+        -DBUILD_CPP_EXAMPLES=OFF \
+        -DUSE_GPERFTOOLS=OFF \
+        -DUSE_JEMALLOC=OFF \
+        -G Ninja && \
+    ninja -C build && \
+    cd python && \
+    python3 setup.py install
+
+COPY hdf5-1.10.2-no-trailing-attributes.patch /tmp
+RUN cd /tmp && \
+    curl -sSLO https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2.tar.bz2 && \
+    tar -xf hdf5-1.10.2.tar.bz2 && \
+    cd hdf5-1.10.2 && \
+    patch -p1 -i /tmp/hdf5-1.10.2-no-trailing-attributes.patch && \
+    cmake -Bbuild -H. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr/local -G Ninja && \
+    ninja -C build install && \
+    cd .. && \
+    rm -rf hdf5-1.10.2*
+
+RUN cd /tmp && \
+    curl -sSLO https://github.com/pybind/pybind11/archive/v2.2.3.tar.gz && \
+    tar -xf v2.2.3.tar.gz && \
+    cd pybind11-2.2.3 && \
+    cmake -Bbuild -H. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr/local -DPYBIND11_TEST=off -G Ninja && \
+    ninja -C build install && \
+    cd .. && \
+    rm -f v2.2.3.tar.gz && \
+    rm -rf pybind11-2.2.3
+
+RUN apt-get install -y \
+        libepoxy-dev \
+        libglm-dev \
+        libegl1-mesa-dev \
+        libcgal-dev \
+        libcgal-qt5-dev \
+        qtbase5-dev \
+        qtmultimedia5-dev \
+        libqt5charts5-dev
+
+RUN python3.6 -m pip --no-cache-dir install \
+        numpy \
+        scipy \
+        matplotlib \
+        pandas \
+        jupyterlab
+
+
+RUN apt-get install -y  openssh-server && \
+    mkdir -p /var/run/sshd && \
+    mkdir /root/.ssh && \
+    chmod 700 /root/.ssh && \
+    touch /root/.ssh/authorized_keys
+
+RUN apt-get install -y locales && \
+    locale-gen en_US.UTF-8 en_GB.UTF-8
+
+COPY jupyter_notebook_config.py /root/.jupyter/
+ADD mxnet_profile.sh /etc/profile.d/mxnet.sh
+COPY launch.sh /sbin
+COPY sshd_config /etc/ssh/sshd_config
+
+RUN apt-get clean
+
+WORKDIR "/root"
+ENTRYPOINT [ "/sbin/launch.sh" ]
+CMD [ "sshd" ]
+
+EXPOSE 22
+EXPOSE 8080
\ No newline at end of file

hdf5-1.10.2-no-trailing-attributes.patch

+Attributes must preceed function declarator
+--- a/src/H5detect.c
++++ b/src/H5detect.c
+@@ -1360,8 +1360,8 @@
+  *
+  *-------------------------------------------------------------------------
+  */
+-static void
+-detect_C89_integers(void) HDF_NO_UBSAN
++static void HDF_NO_UBSAN
++detect_C89_integers(void)
+ {
+     DETECT_BYTE(signed char,      SCHAR,        d_g[nd_g]); nd_g++;
+     DETECT_BYTE(unsigned char,      UCHAR,        d_g[nd_g]); nd_g++;
+@@ -1388,8 +1388,8 @@
+  *
+  *-------------------------------------------------------------------------
+  */
+-static void
+-detect_C89_floats(void) HDF_NO_UBSAN
++static void HDF_NO_UBSAN
++detect_C89_floats(void)
+ {
+     DETECT_F(float,     FLOAT,      d_g[nd_g]); nd_g++;
+     DETECT_F(double,    DOUBLE,     d_g[nd_g]); nd_g++;
+@@ -1410,8 +1410,8 @@
+  *
+  *-------------------------------------------------------------------------
+  */
+-static void
+-detect_C99_integers8(void) HDF_NO_UBSAN
++static void HDF_NO_UBSAN
++detect_C99_integers8(void)
+ {
+ #if H5_SIZEOF_INT8_T>0
+   #if H5_SIZEOF_INT8_T==1
+@@ -1472,8 +1472,8 @@
+  *
+  *-------------------------------------------------------------------------
+  */
+-static void
+-detect_C99_integers16(void) HDF_NO_UBSAN
++static void HDF_NO_UBSAN
++detect_C99_integers16(void)
+ {
+ #if H5_SIZEOF_INT16_T>0
+     DETECT_I(int16_t,           INT16,        d_g[nd_g]); nd_g++;
+@@ -1510,8 +1510,8 @@
+  *
+  *-------------------------------------------------------------------------
+  */
+-static void
+-detect_C99_integers32(void) HDF_NO_UBSAN
++static void HDF_NO_UBSAN
++detect_C99_integers32(void)
+ {
+ #if H5_SIZEOF_INT32_T>0
+     DETECT_I(int32_t,           INT32,        d_g[nd_g]); nd_g++;
+@@ -1548,8 +1548,8 @@
+  *
+  *-------------------------------------------------------------------------
+  */
+-static void
+-detect_C99_integers64(void) HDF_NO_UBSAN
++static void HDF_NO_UBSAN
++detect_C99_integers64(void)
+ {
+ #if H5_SIZEOF_INT64_T>0
+     DETECT_I(int64_t,           INT64,        d_g[nd_g]); nd_g++;
+@@ -1599,8 +1599,8 @@
+  *
+  *-------------------------------------------------------------------------
+  */
+-static void
+-detect_C99_integers(void) HDF_NO_UBSAN
++static void HDF_NO_UBSAN
++detect_C99_integers(void)
+ {
+     /* break it down to more subroutines so that each module subroutine */
+     /* is smaller and takes less time to compile with optimization on.  */
+@@ -1625,8 +1625,8 @@
+  *
+  *-------------------------------------------------------------------------
+  */
+-static void
+-detect_C99_floats(void) HDF_NO_UBSAN
++static void HDF_NO_UBSAN
++detect_C99_floats(void)
+ {
+ #if H5_SIZEOF_DOUBLE == H5_SIZEOF_LONG_DOUBLE
+     /*
+@@ -1656,8 +1656,8 @@
+  *
+  *-------------------------------------------------------------------------
+  */
+-static void
+-detect_alignments(void) HDF_NO_UBSAN
++static void HDF_NO_UBSAN
++detect_alignments(void)
+ {
+     /* Detect structure alignment for pointers, hvl_t, hobj_ref_t, hdset_reg_ref_t */
+     DETECT_M(void *,              POINTER,      m_g[na_g]); na_g++;
+@@ -1744,8 +1744,8 @@
+  *
+  *-------------------------------------------------------------------------
+  */
+-int
+-main(void) HDF_NO_UBSAN
++int HDF_NO_UBSAN
++main(void)
+ {
+ 
+ #if defined(H5_HAVE_SETSYSINFO) && defined(SSI_NVPAIRS)

jupyter_notebook_config.py

+c.NotebookApp.ip = '*'
+c.NotebookApp.port = 8080
+c.NotebookApp.open_browser = False
+c.NotebookApp.token = ''
+c.NotebookApp.password = ''

launch.sh

+#! /bin/sh
+
+set -e
+
+case "$1" in
+sshd)
+    exec /usr/sbin/sshd -D
+    ;;
+*)
+    exec "$@"
+    ;;
+esac
\ No newline at end of file

mxnet_profile.sh

+#! /bin/sh
+export MXNet_DIR=/opt/mxnet-1.2.1
\ No newline at end of file

sshd_config

+Port 22
+
+PubkeyAuthentication yes
+PasswordAuthentication no
+PermitRootLogin prohibit-password
+PermitEmptyPasswords no
+UsePAM yes
+
+X11Forwarding yes
+X11UseLocalhost no
+
+PrintMotd no
+PrintLastLog no
+
+Subsystem       sftp    /usr/lib64/misc/sftp-server
+
+AcceptEnv LANG LC_*
\ No newline at end of file