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400c366f

Commit 400c366f authored 3 years ago by james94

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Add Pretext and improve/fix report PDF

parent 75946085

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Snakefile 55 additions, 54 deletions

Snakefile
envs/busco_and_assembly.yaml 1 addition, 1 deletion

envs/busco_and_assembly.yaml
envs/pretext.yaml 0 additions, 0 deletions

envs/pretext.yaml
installGEP.yaml 4 additions, 3 deletions

installGEP.yaml
rules/hifi_05_11_21.smk 7 additions, 7 deletions

rules/hifi_05_11_21.smk
rules/illumina_05_11_21.smk 6 additions, 6 deletions

rules/illumina_05_11_21.smk
rules/run_05_11_21.smk 618 additions, 215 deletions

rules/run_05_11_21.smk
scripts/digest.py 26 additions, 0 deletions

scripts/digest.py
scripts/filter_five_end.pl 109 additions, 0 deletions

scripts/filter_five_end.pl
scripts/makePDF_indivMD.py 9 additions, 6 deletions

scripts/makePDF_indivMD.py
scripts/reportLandingPage.md 1 addition, 4 deletions

scripts/reportLandingPage.md
scripts/reportTABLELandingPage.md 19 additions, 0 deletions

scripts/reportTABLELandingPage.md
scripts/stats.py 1 addition, 1 deletion

scripts/stats.py
scripts/two_read_bam_combiner.pl 124 additions, 0 deletions

scripts/two_read_bam_combiner.pl

with 980 additions and 297 deletions

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