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Commit 851dd8ac authored by james94's avatar james94
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add Rscript directive to genomescope2 command

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......@@ -283,7 +283,7 @@ rule genomescope2:
shell:
"""
expand -t 1 {input.hist} > {params.cpHist}
genomescope2 -i {params.cpHist} -o {params.outFolder} -k 21 -n {wildcards.sample}
Rscript genomescope2 -i {params.cpHist} -o {params.outFolder} -k 21 -n {wildcards.sample}
grep "Genome Haploid Length" {output.summary} | awk {{'print $6'}} | sed 's/,//g'> {output.estimatedSize}
"""
......
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