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- SUBMIT_CONFIG/default/config.yaml 3 additions, 4 deletionsSUBMIT_CONFIG/default/config.yaml
- SUBMIT_CONFIG/slurm/cluster.yaml 178 additions, 178 deletionsSUBMIT_CONFIG/slurm/cluster.yaml
- Snakefile 23 additions, 24 deletionsSnakefile
- envs/merylMerq_2.yaml 11 additions, 9 deletionsenvs/merylMerq_2.yaml
- rules/build_hifi.smk 172 additions, 0 deletionsrules/build_hifi.smk
- rules/build_illumina.smk 307 additions, 0 deletionsrules/build_illumina.smk
- scripts/addFullTableForReport.py 23 additions, 0 deletionsscripts/addFullTableForReport.py
- scripts/filter_five_end.pl 1 addition, 0 deletionsscripts/filter_five_end.pl
- scripts/pretextMapsToMarkdown.py 6 additions, 0 deletionsscripts/pretextMapsToMarkdown.py
- testData/SpeciesX_R1.fastq.gz 0 additions, 0 deletionstestData/SpeciesX_R1.fastq.gz
- testData/SpeciesX_R2.fastq.gz 0 additions, 0 deletionstestData/SpeciesX_R2.fastq.gz
- testData/SpeciesX_assembly.fasta 0 additions, 0 deletionstestData/SpeciesX_assembly.fasta
- testData/SpeciesY_assembly.fasta 0 additions, 0 deletionstestData/SpeciesY_assembly.fasta
- testData/SpeciesY_library1_R1.fastq.gz 0 additions, 0 deletionstestData/SpeciesY_library1_R1.fastq.gz
- testData/SpeciesY_library1_R2.fastq.gz 0 additions, 0 deletionstestData/SpeciesY_library1_R2.fastq.gz
- testData/SpeciesY_library2_R1.fastq.gz 0 additions, 0 deletionstestData/SpeciesY_library2_R1.fastq.gz
- testData/SpeciesY_library2_R2.fastq.gz 0 additions, 0 deletionstestData/SpeciesY_library2_R2.fastq.gz
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