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hifi reads and added significantly more options
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- SUBMIT_CONFIG/default/config.yaml 10 additions, 0 deletionsSUBMIT_CONFIG/default/config.yaml
- SUBMIT_CONFIG/slurm/config.yaml 31 additions, 0 deletionsSUBMIT_CONFIG/slurm/config.yaml
- Snakefile 198 additions, 45 deletionsSnakefile
- envs/genomescope.yaml 1 addition, 1 deletionenvs/genomescope.yaml
- envs/merylMerq.yaml 0 additions, 13 deletionsenvs/merylMerq.yaml
- envs/pigz.yaml 1 addition, 0 deletionsenvs/pigz.yaml
- installGEP.yaml 2 additions, 1 deletioninstallGEP.yaml
- report/aggregate.rst 0 additions, 1 deletionreport/aggregate.rst
- report/assemblystats/stats.rst 0 additions, 18 deletionsreport/assemblystats/stats.rst
- report/busco.rst 0 additions, 1 deletionreport/busco.rst
- report/genomescope/linearplot.rst 0 additions, 3 deletionsreport/genomescope/linearplot.rst
- report/genomescope/logplot.rst 0 additions, 3 deletionsreport/genomescope/logplot.rst
- report/genomescope/summary.rst 0 additions, 12 deletionsreport/genomescope/summary.rst
- report/merqury/qvScore.rst 0 additions, 9 deletionsreport/merqury/qvScore.rst
- report/merqury/spectra-cn_filled.rst 0 additions, 1 deletionreport/merqury/spectra-cn_filled.rst
- report/merqury/spectra-cn_stacked.rst 0 additions, 1 deletionreport/merqury/spectra-cn_stacked.rst
- report/test.rst 0 additions, 1 deletionreport/test.rst
- report/workflow.rst 0 additions, 18 deletionsreport/workflow.rst
- rules/hifi_05_11_21.smk 188 additions, 0 deletionsrules/hifi_05_11_21.smk
- rules/illumina_05_11_21.smk 279 additions, 0 deletionsrules/illumina_05_11_21.smk
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