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Commit fc7d38fa authored by james94's avatar james94
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change resources

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......@@ -8,63 +8,62 @@
#### PRETEXT ####
unzipHiC_R1:
mem_mb: 500
unzipFastq_R1_HiC:
mem_mb: 5000
time: "01:30:05"
threads: 4
unzipHiC_R2:
mem_mb: 500
unzipFastq_R2_HiC:
mem_mb: 5000
time: "01:30:05"
threads: 4
pretext_index_PRI_asm:
indexFasta_PRI:
mem_mb: 72000
time: "02:30:00"
threads: 1
pretext_fastq2bam_R1:
convertFastqTObam_R1_HiC:
mem_mb: 32000
time: "08:00:00"
threads: 12
pretext_fastq2bam_R2:
convertFastqTObam_R2_HiC:
mem_mb: 32000
time: "08:00:00"
threads: 12
pretext_filter_5primeEnd_R1:
mem_mb: 200
filter5PrimeEnd_R1_HiC:
mem_mb: 2000
time: "08:00:00"
threads: 4
pretext_filter_5primeEnd_R2:
mem_mb: 200
filter5PrimeEnd_R2_HiC:
mem_mb: 2000
time: "08:00:00"
threads: 4
pretext_filtered_combine:
pairAndCombineFiltered_HiC:
mem_mb: 9500
time: "08:30:00"
threads: 12
pretext_map:
pretextMap:
mem_mb: 32000
time: "08:30:00"
threads: 12
pretext_snapshot:
pretextSnapshot:
mem_mb: 500
time: "00:10:00"
threads: 1
unzipFasta_PRI:
mem_mb: 500
time: "00:15:00"
......@@ -90,7 +89,7 @@ busco5:
threads: 16
genomescope2:
GenomeScope2Profiles:
mem_mb: 500
time: "00:15:00"
threads: 1
......@@ -102,20 +101,20 @@ assemblyStats:
threads: 1
makePDF:
mem_mb: 1000
time: "00:10:05"
threads: 1
# ReportWithoutComparisonTables_createPDF:
# mem_mb: 1000
# time: "00:10:05"
# threads: 1
###### Rules for illuminadb building ##########
unzipFastq_R1:
unzipFastq_R1_illumina:
mem_mb: 96000
time: "01:45:05"
threads: 4
unzipFastq_R2:
unzipFastq_R2_illumina:
mem_mb: 96000
time: "01:45:05"
threads: 4
......@@ -123,36 +122,36 @@ unzipFastq_R2:
trim10xbarcodes:
mem_mb: 500
trim10xBarcodes_illumina:
mem_mb: 5000
time: "02:30:05"
threads: 4
trimAdapters:
mem_mb: 500
trimSequencingAdapters_illumina:
mem_mb: 5000
time: "02:30:05"
threads: 8
fastqc_Illumina:
fastQC_illumina:
mem_mb: 1000
time: "04:00:05"
threads: 4
meryl_R1:
merylCount_R1_illumina:
mem_mb: 20000
time: "01:30:05"
threads: 12
meryl_R2:
merylCount_R2_illumina:
mem_mb: 20000
time: "01:30:05"
threads: 12
meryl_illumina_build:
merylUnion_illumina:
mem_mb: 30000
time: "02:45:05"
threads: 12
......@@ -162,35 +161,33 @@ meryl_illumina_build:
###### HIFI BUILD #######
unzipHifi:
unzipFastq_hifi:
mem_mb: 128000
time: "01:30:05"
threads: 4
trimSMRTBellAdapters_hifi:
mem_mb: 96000
time: "01:30:05"
threads: 4
fastqc_hifi:
fastQC_hifi:
mem_mb: 12000
time: "04:00:05"
threads: 2
multiqc_hifi:
multiQC_hifi:
mem_mb: 4000
time: "01:15:05"
threads: 2
meryl_hifi_count:
merylCount_hifi:
mem_mb: 96000
time: "02:30:05"
threads: 12
meryl_hifi_build:
merylUnion_hifi:
mem_mb: 96000
time: "01:30:05"
threads: 12
trimSMRTbell:
mem_mb: 96000
time: "01:30:05"
threads: 4
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