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Snakemake pipeline for genome evaluation. Evaluation of exisiting assemblies, assembly pipeline intermediate steps and evaliation of genome improvement attempts.

A series of scripts to help creating a catalog of reduced-representation single-copy ortholog sequences (R2SCOs) starting from Stacks2 output. Expected input includes results from the de novo Stack2 pipeline ran using overlapping paired-end reads.

A modified version of OpenMPI that makes it possible to swap/permutate ranks of OMPI-processes inside the same job using an external agent connected via Unix domain sockets.

This repository is intended to be used by students for the alp4 course at the FUB. See Readme for how to configure and use it.

This repository contains the code for my bachelor thesis.

Project for the Internet Measurement course SoSe22