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Commit 8d9f4e67 authored by giacuong171's avatar giacuong171
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fix README

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......@@ -21,34 +21,6 @@ For running apply machine learning model, you can go through ml_model.ipynb \
## Results
Result data from each step of the project are in results directory.
## Project structure
├── code
│ ├── cnv_analysis_PGC.Rmd
│ ├── gene_expression_analysis_PGC.Rmd
│ └── ml_model_PGC.ipynb
├── data
│ ├── cnv.segment.seg.txt
│ ├── TCGA-BLCA.GDC_phenotype.tsv.gz
│ ├── TCGA-BLCA.htseq_counts.tsv.gz
│ └── TCGA-BLCA.survival.tsv
├── final_presentation
├── README.md
├── results
│ ├── cnv_analysis
│ │ ├── final_cnv.csv
│ │ └── Tumor.All.txt
│ └── gene_exp_analysis
│ ├── clinical.csv
│ ├── cnv_genes_exp.combine.csv
│ ├── cnv_genes_exp_raw.combine.csv
│ ├── cnv_genes_exp_stage.combine.csv
│ ├── count_data.csv
│ ├── gene_annotation.csv
│ ├── lasso_selected_count.csv
│ └── raw_cnv_genes_exp.combine.csv
└── slides
└── DS_Final_presentation.pdf
## Code junk
For the analysis that we didn't include into the presentation, the scripts are stored in the following git repository: \
https://github.com/giacuong171/MultiOmic_Datascience
\ No newline at end of file
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