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Commit 7a6e0151 authored by Schulte-Mattler's avatar Schulte-Mattler
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diff.txt
+ 40
− 389
View file @ 7a6e0151
diff query 4660:
ours: 155 156 157 158
hashtable:
diff query 8824:
ours: 181 182
hashtable:
diff query 8825:
ours:
hashtable: 181 182
diff query 33795:
ours: 187 188 189 190 191 192 193
hashtable:
diff query 48825:
ours: 144
hashtable:
diff query 67677:
ours: 36 37 38 39 40 41 42 43 44 46 48
hashtable: 36 37 42 46 47 48
diff query 136718:
ours: 202
hashtable:
diff query 160986:
ours: 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 198
hashtable: 181 185 186 187 188 190 191 192 195 196 198
diff query 182586:
ours: 137 138 139 143 144 145 146 147 148 149 150
hashtable: 137 138 139 143 144 145 147 148 149 150
diff query 187336:
ours: 199
hashtable:
diff query 213057:
ours: 163 164 165 166 167 168 169 170 171 173 175
hashtable: 163 164 169 173 174 175
diff query 244462:
ours: 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182
hashtable: 142 143 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 177 178 179
diff query 303476:
ours: 193 194 195 196 199
hashtable:
diff query 306322:
ours: 163 164 165 166 167 168 169 170 171 173 175
hashtable: 163 164 169 173 174 175
diff query 353085:
ours: 132 133 134 135 136 137 138 139 140 141 142
hashtable: 134 136 139 140 141 142
diff query 366913:
ours: 0 1 2 3 4 5 6 7 8 10 12
hashtable: 0 1 6 10 11 12
diff query 389124:
ours: 200 201 202 203 204 205
hashtable: 199 205
diff query 427460:
ours: 14 15 16 20 21 22 23 24 25 26 27
hashtable: 14 15 16 20 21 22 24 25 26 27
diff query 497172:
ours:
hashtable: 202
diff query 500866:
ours: 71 72 73 74 75 76
hashtable:
diff query 511397:
ours:
hashtable: 72
diff query 544580:
ours: 0 1 5 6 7 8 9 10 11 12
hashtable: 0 1 5 6 7 9 10 11 12
diff query 551800:
ours: 220
hashtable:
diff query 577009:
ours: 13 14 15 19 20 21 22 23 24 25 26
hashtable: 13 14 15 19 20 21 23 24 25 26
diff query 577696:
ours: 72 73 74 78 79 80 81 82 83 84 85
hashtable: 72 73 74 78 79 80 82 83 84 85
diff query 605288:
ours: 13 14 15 19 20 21 22 23 24 25 26
hashtable: 13 14 15 19 20 21 23 24 25 26
diff query 628683:
ours: 5 6 7 8 9 10 11 12 13 15 17
hashtable: 5 6 11 15 16 17
diff query 635056:
ours: 58 59 60 61
hashtable: 60 61
diff query 659802:
ours: 159 160
hashtable:
diff query 673741:
ours: 198 199 200 203 204
hashtable:
diff query 773699:
ours: 10 11 12 13 14 15 16 17 18 20 22
hashtable: 10 11 16 20 21 22
diff query 830075:
ours: 95 113 114 115
hashtable:
diff query 844560:
ours: 165
hashtable:
diff query 899783:
ours: 170 171 172
hashtable:
diff query 913899:
ours: 217 218 219
hashtable:
diff query 931827:
ours: 82 83 84 88 89 90 91 92 93 94 95
hashtable: 82 83 84 88 89 90 92 93 94 95
diff query 939133:
ours: 9 10 11 15 16 17 18 19 20 21 22
hashtable: 9 10 11 15 16 17 19 20 21 22
diff query 942086:
ours: 122 123 124 125 126 127 128 129 130 132 134
hashtable: 122 123 128 132 133 134
diff query 971969:
ours: 73 74 75 76 77 78 79 80 81 83 85
hashtable: 73 74 79 83 84 85
diff query 977008:
ours: 54 55 56 60 61 62 63 64 65 66 67
hashtable: 54 55 56 60 61 62 64 65 66 67
diff query 977342:
ours:
hashtable: 187
diff query 988036:
ours: 187 188
hashtable:
diff query 1012571:
ours: 178 179 180 184 185 186 187 188 189 190 191
hashtable: 178 179 180 184 185 186 188 189 190 191
diff query 1014341:
ours: 180 181 183 184 185 186 187 188 189 190
hashtable: 181 185 186 187 190
diff query 1062534:
ours: 187 188
hashtable:
diff query 1076583:
ours: 180 181
hashtable:
diff query 1081776:
ours: 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
hashtable:
diff query 1084825:
ours: 120 122 124 127 128
hashtable: 120 127 128
diff query 1102266:
ours:
hashtable: 219
diff query 1144912:
ours: 203 204 205 206 209 210 213 214 215 216
hashtable: 209 214 215 216
diff query 1156096:
ours: 168 177 178 179
hashtable: 177 178 179
diff query 1161885:
ours: 0 1 2 3 4 5 6 7
hashtable: 0 1 2 3 4
diff query 1218118:
ours: 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47
hashtable: 14
diff query 1238193:
ours: 211 212 215
hashtable: 215
diff query 1254234:
ours: 135 136 137 141 142 143 144 145 146 147 148
hashtable: 135 136 137 141 142 143 145 146 147 148
diff query 1263636:
ours: 208 211 212 213
hashtable:
diff query 1320762:
ours:
hashtable: 199
diff query 1321578:
ours: 84 86 87 88 89 90
hashtable:
diff query 1353322:
ours: 118 119 120 122 127 128 129 130 131
hashtable: 127 128 129 130 131
diff query 1366393:
ours: 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 187 188
hashtable: 166 187 188
diff query 1403982:
ours: 176 177
hashtable: 177
diff query 1441511:
ours: 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 64
hashtable:
diff query 1441513:
ours: 117
hashtable:
diff query 1508708:
ours: 104 105 106 107 108 109 110 111 112 114 116
hashtable: 104 105 110 114 115 116
diff query 1522809:
ours: 135 136 137 141 142 143 144 145 146 147 148
hashtable: 135 136 137 141 142 143 145 146 147 148
diff query 1523148:
ours: 29 30 31 35 36 37 38 39 40 41 42
hashtable: 29 30 31 35 36 37 39 40 41 42
diff query 1524663:
ours: 115 116 117 118 119 120 121 122 123 125 127
hashtable: 115 116 121 125 126 127
diff query 1528412:
ours: 83 84 85 86 87 88 89 90 91 93 95
hashtable: 83 84 89 93 94 95
diff query 1553127:
ours: 47 48 49 50 51 52 53 54 55 57 59
hashtable: 47 48 53 57 58 59
diff query 1568855:
ours: 208
hashtable:
diff query 1621110:
ours: 41 42 43 44 45 46 47 48 49 51 53
hashtable: 41 42 47 51 52 53
diff query 1678068:
ours: 120 121 122
hashtable:
diff query 1678069:
ours: 119 120 121 122
hashtable:
diff line 1693138 pos 0: 219 220
diff query 1698763:
ours: 191 192 193 194
hashtable: 192 193
diff query 1707478:
ours: 168 169 170
hashtable:
diff query 1733401:
ours: 77 78 79 83 84 85 86 87 88 89 90
hashtable: 77 78 79 83 84 85 87 88 89 90
diff query 1737171:
ours:
hashtable: 193
diff query 1772604:
ours: 102 109
hashtable:
diff query 1799809:
ours: 77 78 79 83 84 85 86 87 88 89 90
hashtable: 77 78 79 83 84 85 87 88 89 90
diff query 1836300:
ours: 115 116 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132
hashtable:
diff query 1850487:
ours: 123 124 125 129 130 131 132 133 134 135 136
hashtable: 123 124 125 129 130 131 133 134 135 136
diff query 1853286:
ours: 203 204 205 206 207 208 209 210 211 213 215
hashtable: 203 204 209 213 214 215
diff query 1922616:
ours: 5 6 7 8 9 10 11 12 13 15 17
hashtable: 5 6 11 15 16 17
diff query 1965721:
ours: 135 136 137 141 142 143 144 145 146 147 148
hashtable: 135 136 137 141 142 143 145 146 147 148
diff query 1974436:
ours: 0 1 2 3 4 5 6 7 8 10 12
hashtable: 0 1 6 10 11 12
diff query 2047864:
ours: 35 36 37 41 42 43 44 45 46 47 48
hashtable: 35 36 37 41 42 43 45 46 47 48
diff query 2055645:
ours: 145
hashtable:
diff query 2081395:
ours: 90 93 97
hashtable: 97
diff query 2086177:
ours: 142 143 144 148 149 150 151 152 153 154 155
hashtable: 142 143 144 148 149 150 152 153 154 155
diff query 2093958:
ours: 123
hashtable:
diff query 2099673:
ours: 93 94 95 99 100 101 102 103 104 105 106
hashtable: 93 94 95 99 100 101 103 104 105 106
diff query 2130929:
ours: 122 123 124 125 126 127 128 129 130 132 134
hashtable: 122 123 128 132 133 134
diff query 2249553:
ours:
hashtable: 154
diff query 2257827:
ours:
hashtable: 18
diff query 2289614:
ours: 147 148 149 153 154 155 156 157 158 159 160
hashtable: 147 148 149 153 154 155 157 158 159 160
diff query 2306970:
ours: 174 175 176 177 178 179 180 181 182 184 186
hashtable: 174 175 180 184 185 186
diff query 2314043:
ours: 135 136
hashtable:
more k-mers using our index.
k-mers found in HT not in index...
k-mers found in index not in HT...
query id: 1441511 position: 25 k-mer: CAACAAGAAAAAAAAAAAAAAAAAAAAAAAA
query id: 1441511 position: 26 k-mer: AACAAGAAAAAAAAAAAAAAAAAAAAAAAAA
query id: 1441511 position: 31 k-mer: GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
query id: 1441511 position: 57 k-mer: AAAAAAAAAAAAAAAAAAAAAAAAAAAAGGG
query id: 1441511 position: 58 k-mer: AAAAAAAAAAAAAAAAAAAAAAAAAAAGGGA
query id: 1441511 position: 59 k-mer: AAAAAAAAAAAAAAAAAAAAAAAAAAGGGAG
query id: 1441511 position: 60 k-mer: AAAAAAAAAAAAAAAAAAAAAAAAAGGGAGA
query id: 1441511 position: 61 k-mer: AAAAAAAAAAAAAAAAAAAAAAAAGGGAGAA
query id: 1441511 position: 64 k-mer: AAAAAAAAAAAAAAAAAAAAAGGGAGAAAAA
query id: 1836300 position: 116 k-mer: AAACAAAAAAAAAAAAAAAAAAAAACAAAAA
query id: 1836300 position: 119 k-mer: CAAAAAAAAAAAAAAAAAAAAACAAAAAAAA
query id: 1836300 position: 120 k-mer: AAAAAAAAAAAAAAAAAAAAACAAAAAAAAA
query id: 1836300 position: 121 k-mer: AAAAAAAAAAAAAAAAAAAACAAAAAAAAAA
query id: 1836300 position: 128 k-mer: AAAAAAAAAAAAACAAAAAAAAAAAAAACAA
query id: 1836300 position: 129 k-mer: AAAAAAAAAAAACAAAAAAAAAAAAAACAAA
query id: 1836300 position: 130 k-mer: AAAAAAAAAAACAAAAAAAAAAAAAACAAAA
query id: 1836300 position: 134 k-mer: AAAAAAACAAAAAAAAAAAAAACAAAAAACA
checking k-mers in text...
query id: 1441511 position: 25 unitig id: 95923 position: 62
query id: 1441511 position: 26 unitig id: 8571383 position: 57
query id: 1441511 position: 31 unitig id: 3099136 position: 250
query id: 1441511 position: 57 unitig id: 262461 position: 0
query id: 1441511 position: 58 unitig id: 637725 position: 2
query id: 1441511 position: 59 unitig id: 637725 position: 3
query id: 1441511 position: 60 unitig id: 637725 position: 4
query id: 1441511 position: 61 unitig id: 637725 position: 5
query id: 1441511 position: 64 unitig id: 4572554 position: 6
query id: 1836300 position: 116 unitig id: 7216318 position: 4055
query id: 1836300 position: 119 unitig id: 1826442 position: 1
query id: 1836300 position: 120 unitig id: 1826442 position: 2
query id: 1836300 position: 121 unitig id: 4914981 position: 8
query id: 1836300 position: 128 unitig id: 101655 position: 0
query id: 1836300 position: 129 unitig id: 101655 position: 1
query id: 1836300 position: 130 unitig id: 2011380 position: 1622
query id: 1836300 position: 134 unitig id: 10209974 position: 0
found all.
test/compare.cpp
+ 2
− 0
View file @ 7a6e0151
......@@ -130,6 +130,8 @@ int main(int argc, char** argv)
for(auto diff : difference2) {
auto pos = text_positions.find({diff.first, diff.second})->second;
seqan3::debug_stream << "query id: " << diff.first << " position: " << diff.second
<< " unitig id: " << pos.first << " position: " << pos.second << "\n";
for(int j=0; j < 31; j++) {
if(queries[diff.first][diff.second + j] != text[pos.first][pos.second + j]) {
seqan3::debug_stream << "error: k-mer not in text!\n";
......
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