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Feb 05, 2023
- partial solution for pigeon hole fmindex search · 0bf4916b
  Maike Herkenrath authored Feb 5, 2023
  
  0bf4916b
- added new fmindex search which works better for benchmark · 20c490bb
  Jule Brenningmeyer authored Feb 5, 2023
  
  20c490bb
- file for benchmark of fm index added · d91dca4f
  Jule Marie Brenningmeyer authored Feb 5, 2023
  
  d91dca4f
- fixed cmakelists so it compiles pigeon and not fmindex from before · 6d505c43
  Maike Herkenrath authored Feb 5, 2023
  
  6d505c43
Feb 02, 2023
- updated cmakeLists to include pigeon · 0c8fb4f1
  Maike Herkenrath authored Feb 2, 2023
  
  0c8fb4f1
- added pigeon template · 004fb206
  Maike Herkenrath authored Feb 2, 2023
  
  004fb206
Jan 29, 2023
- Update fmindex.R · bfa72a55
  mishraa94 authored Jan 29, 2023
  
  bfa72a55
- final commented version · d82644a0
  mishraa94 authored Jan 29, 2023
  
  d82644a0
- Replace fmindex.R · 53f06094
  mishraa94 authored Jan 29, 2023
  
  53f06094
- command line script with arguments for files and queries; comments to be... · 7b96fdd1
  mishraa94 authored Jan 29, 2023
  7b96fdd1
- final version · 09fc4418
  mishraa94 authored Jan 29, 2023
  
  09fc4418
- Delete read_pattern.pl · 0cc9a832
  mishraa94 authored Jan 29, 2023
  
  0cc9a832
- included option to use index or regex for naive search: no further edit after this. · b507e653
  mishraa94 authored Jan 29, 2023
  
  b507e653
- not useful · 92b7ce14
  mishraa94 authored Jan 29, 2023
  
  92b7ce14
Jan 27, 2023
- benchmark bash script for fmindex, please run it to double check · c415c07e
  mishraa94 authored Jan 27, 2023
  
  c415c07e
- skeleton code for fmindex searching · 6cca1591
  mishraa94 authored Jan 27, 2023
  
  6cca1591
Jan 25, 2023
- file path for running on server added · 1316eeee
  mishraa94 authored Jan 25, 2023
  
  1316eeee
- Update read_pattern.pl · 0672a4b3
  mishraa94 authored Jan 25, 2023
  
  0672a4b3
Jan 24, 2023
- Jules fmindex search added · 4a5d7ec0
  Jule Marie Brenningmeyer authored Jan 24, 2023
  
  4a5d7ec0
Jan 23, 2023
- Assignment 1 without suffix-array based search, it didn't work afterall · d82fdd0b
  mishraa94 authored Jan 23, 2023
  
  d82fdd0b
Jan 22, 2023
- Remaining :fixing a pipeline issue with I/O for suffix_array, everything else done! · 6c4f42af
  mishraa94 authored Jan 22, 2023
  
  6c4f42af
- fix queries init 2 · 38ec6c1c
  juleb97 authored Jan 22, 2023
  
  38ec6c1c
- fix queries initialization · 556c1e32
  juleb97 authored Jan 22, 2023
  
  556c1e32
- added bash script files to run the benchmark tests · b6a40049
  Maike Herkenrath authored Jan 22, 2023
  
  b6a40049
- Finished both tasks. · 6124467a
  Maike Herkenrath authored Jan 22, 2023
  
  6124467a
Jan 21, 2023
- Suffix array search is done. · a29f88d6
  Maike Herkenrath authored Jan 21, 2023
  
  a29f88d6
Jan 20, 2023
- partially done suffix search. Setting up the suffix array works. · 1b14a319
  Maike Herkenrath authored Jan 20, 2023
  
  1b14a319
- Everything including usage, details, implementation, under construction etc... · 952c4a96
  mishraa94 authored Jan 20, 2023
  952c4a96
Jan 19, 2023
- update naive_search_jule · 9d8ed3c7
  Jule Marie Brenningmeyer authored Jan 19, 2023
  
  9d8ed3c7
- rename naive_search_jule · 1d16b5de
  Jule Marie Brenningmeyer authored Jan 19, 2023
  
  1d16b5de
Jan 18, 2023
- Added Maikes version of the naive search · a6071e1b
  Maike Herkenrath authored Jan 18, 2023
  
  a6071e1b
- Added seqan Directory again. This time deleted all git related files beforehand · cd9b9d6c
  Maike Herkenrath authored Jan 18, 2023
  
  cd9b9d6c
- removed seqan directory · ac425b2b
  Maike Herkenrath authored Jan 18, 2023
  
  ac425b2b
- finished naive code · 9c7b5b7c
  Jule Marie Brenningmeyer authored Jan 18, 2023
  
  9c7b5b7c
Jan 17, 2023
- comments added · 1ec0a262
  Jule Marie Brenningmeyer authored Jan 17, 2023
  
  1ec0a262
- added Simons code · 6bf77b12
  Maike Herkenrath authored Jan 17, 2023
  
  6bf77b12