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Commit 6838ba1c authored by seehagec01's avatar seehagec01
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changed dir in fastqc

parent 106d81a8
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......@@ -47,8 +47,8 @@ rule trimmedfastqc1:
"results/trimmed/{sample}_forward_paired.fq.gz",
"results/trimmed/{sample}_reverse_paired.fq.gz"
output:
html="results/fastqc/trimmed/{sample}_1_fastqc.html",
zip="results/fastqc/trimmed/{sample}_1_fastqc.zip"
html="results/trimmed_fastqc/{sample}_1_fastqc.html",
zip="results/trimmed_fastqc/{sample}_1_fastqc.zip"
conda:
"../envs/yourenv.yaml"
log:
......@@ -62,8 +62,8 @@ rule trimmedfastqc2:
"results/trimmed/{sample}_forward_paired.fq.gz",
"results/trimmed/{sample}_reverse_paired.fq.gz"
output:
html="results/fastqc/trimmed/{sample}_2_fastqc.html",
zip="results/fastqc/trimmed/{sample}_2_fastqc.zip"
html="results/trimmed_fastqc/{sample}_2_fastqc.html",
zip="results/trimmed_fastqc/{sample}_2_fastqc.zip"
conda:
"../envs/yourenv.yaml"
log:
......
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