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Created with Raphaël 2.2.019May111054228Apr272625242321201824Mar222118fix #4 + final workflowmainmainadded fastp params #4added quast + multiqc ruleswd updateupdated snakefileshiver + seqkitfix #5fix #6 #7fix #8added kraken report for trimmed and unmapped filesupdated log filesiva producing contigs yayupdated fastpIVA produziert contigs für 3/6 sampleslottilottipush vor branchwechselkraken buildworky workyKraken db, Ivakraken kinda workingyamlworking bowtie2 + fastqsambamMerge branch 'main' of https://git.imp.fu-berlin.de/seehagec01/swp-workflowsbowtie wrapper + simple krakensamtoolstrying krakenyourenv bedtools hinzu, ivaschen hinzu; snakefile, samtools rule fastq mit ERR4082860 funktioniertbowtie2, samtools gemachtfastp rulefastp rulesetupfix #3changed dir in fastqcfix #3added qualimapannaannafix#2fix#1finalaggregationaggregationsetupsetupInitial commit