updated list of contents

docs/contents.rst

@@ -3,26 +3,6 @@
 Welcome to TRex's documentation!
 ================================
 
-.. toctree::
-   :maxdepth: 2
-   :caption: Contents:
-   
-   install
-   run
-   formats
-   parameters_trex
-   parameters_tgrabs
-
-Indices and tables
-==================
-
-* :ref:`genindex`
-* :ref:`modindex`
-* :ref:`search`
-
-Overview
-========
-
 |trex| is a tracking software designed to track and identify individuals and other moving entities using computer vision and machine learning. The work-load is split into two (not entirely separate) tools:
 
 * **TGrabs**: Record or convert existing videos, perform live-tracking and closed-loop experiments
@@ -30,21 +10,30 @@ Overview
 
 .. raw:: html
 
-    <div style="position: relative; padding-bottom: 56.25%; height: 0; overflow: hidden; max-width: 100%; height: auto;">
-		<video autoplay muted loop playsinline id="myVideo">
-				<source src="composite_tracking_video.webm" type='video/webm; codecs="vp9"' />
-				<source src="composite_tracking_video_.mp4" type='video/mp4; codecs="avc1"'>
-				<source src="composite_tracking_video.mov" type='video/mp4; codecs="h264"' />
-		</video>
-    </div>
+	<video autoplay muted loop playsinline id="myVideo" style="position: relative; padding-bottom: 15px; height: 0; overflow: hidden; max-width: 100%; height: auto;">
+		<source src="composite_tracking_video.webm" type='video/webm; codecs="vp9"' />
+		<source src="composite_tracking_video_.mp4" type='video/mp4; codecs="avc1"'>
+		<source src="composite_tracking_video.mov" type='video/mp4; codecs="h264"' />
+	</video>
 
 |grabs| always has to be used first. |trex| is optional in some cases. Use-cases where |trex| is not required include:
 
 * *Just give me tracks*: The user has a video and wants positional, or posture-related data for the individuals seen in the video. Maintaining identities is not required.
 * *Closed-loop*: React to the behavior of individuals during a trial, e.g. lighting an LED when individuals get close to it, or run a python script every time individual 2 sees individual 3.
 
-Whereas other use-cases do:
+Whereas other use-cases are:
 
 * *Maintaining identities*: Individuals are required to be assigned consistent identities throughout the entire video. Any results involving automatic identity correction will have to use |trex|.
 * *Adjusting parameters with visual feedback*: While |grabs| includes a lot of the functionality of |trex|, it currently has no interface to directly test out parameters. Tracking parameters, specifically, have to be tested in |trex|. This is useful, e.g. when trying to figure out parameters for a batch process or adapting parameters for specific purposes.
-* *Exploring and generating videos for presentations*: |trex| provides a rich set of functionalities for generating heatmaps and other useful visual information, as well as offering support to record anything that is on-screen to a AVI video file. For example, one can follow a subset of individuals and record every frame (lag-free and making sure that no frames are skipped). Any changes to the interface will be visible in the video as well.
\ No newline at end of file
+* *Exploring and generating videos for presentations*: |trex| provides a rich set of functionalities for generating heatmaps and other useful visual information, as well as offering support to record anything that is on-screen to a AVI video file. For example, one can follow a subset of individuals and record every frame (lag-free and making sure that no frames are skipped). Any changes to the interface will be visible in the video as well.
+
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents:
+   
+   install
+   run
+   formats
+   parameters_trex
+   parameters_tgrabs
\ No newline at end of file