- Jul 21, 2023
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
- /04_Cytoscape/new.png - /04_Cytoscape/miRNA-mRNA-Network.png
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aakan96 authored
- /02_MultiMIR/MultiMiR.R - /04_Cytoscape/extract_mrna_names_from_mirna.R
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aakan96 authored
- /02_MultiMIR/MultiMiR.R - /02_MultiMIR/miRNAmRNA.xlsx
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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- Jul 20, 2023
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
- /03_Machine_Learning/DS/miRNA_DS_metadata_col_info.csv - /03_Machine_Learning/DS/miRNA_DS_preprocessed_data.csv - /03_Machine_Learning/DS/mRNA_DS_metadata_col_info.csv - /03_Machine_Learning/DS/mRNA_DS_metadata_col_test_info.csv - /03_Machine_Learning/DS/mRNA_DS_preprocessed_training_data.csv - /03_Machine_Learning/DS/mRNA_DS_test_data.csv - /03_Machine_Learning/DS/mRNA_TCGA_DS_col_data.csv - /03_Machine_Learning/DS/mRNA_TCGA_DS_test_data.csv
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aakan96 authored
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aakan96 authored
- /03_Machine_Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine_Learning/DS_mRNA_limma_dataset_svm_F.ipynb - /03_Machine_Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine_Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb - /03_Machine_Learning/mRNA_TCGA_limma_dataset_svm_final.ipynb - /03_Machine_Learning/mRNA_TCGA_limma_dataset_xgb_final.ipynb - /03_Machine_Learning/mRNA_limma_dataset_xgb_described.ipynb - /03_Machine_Learning/mRNA_limma_dataset_svm_final.ipynb - /03_Machine_Learning/miRNA_limma_dataset_SVM_final.ipynb - /03_Machine_Learning/miRNA_limma_dataset_xgb_described.ipynb
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
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aakan96 authored
- /01_Differential Expression Analysis/Deseq2/mRNA/GSE20347 mRNA.R - /01_Differential Expression Analysis/Deseq2/mRNA/GSE29001 mRNA.R - /01_Differential Expression Analysis/Deseq2/mRNA/GSE70409 mRNA.R - /01_Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /01_Differential Expression Analysis/Limma/mRNA/GSE20347.R - /01_Differential Expression Analysis/Limma/mRNA/GSE29001.R - /01_Differential Expression Analysis/Limma/mRNA/GSE70409.R - /01_Differential Expression Analysis/Limma/miRNA/GSE43732.R - /01_Differential Expression Analysis/Limma/miRNA/GSE55857.R - /01_Differential Expression Analysis/Limma/miRNA/GSE6188.R - /01_Differential Expression Analysis/merging/.gitkeep - /03_Machine Learning/.gitkeep - /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb - /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb - /03_Machine Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/mRNA_DS_preprocessed_training_data.csv - /05_Data Annotation/GO biological function.png - /05_Data Annotation/GO cellular component.png - /05_Data Annotation/GO molecular function.png - /05_Data Annotation/GO_enrichment.R - /05_Data Annotation/biomart_for_annotation.R - /05_Data Annotation/go.csv - /05_Data Annotation/mrna.csv - /06_Survival Analysis/.gitkeep - /06_Survival Analysis/document.pdf - /01_Differential_Expression_Analysis/Deseq2/mRNA/GSE20347 mRNA.R - /01_Differential_Expression_Analysis/Deseq2/mRNA/GSE70409 mRNA.R - /01_Differential_Expression_Analysis/Deseq2/mRNA/GSE29001 mRNA.R - /01_Differential_Expression_Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /01_Differential_Expression_Analysis/Limma/mRNA/GSE29001.R - /01_Differential_Expression_Analysis/Limma/mRNA/GSE20347.R - /01_Differential_Expression_Analysis/Limma/mRNA/GSE70409.R - /01_Differential_Expression_Analysis/Limma/miRNA/GSE6188.R - /01_Differential_Expression_Analysis/Limma/miRNA/GSE43732.R - /01_Differential_Expression_Analysis/Limma/miRNA/GSE55857.R - /01_Differential_Expression_Analysis/merging/.gitkeep - /03_Machine_Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine_Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine_Learning/.gitkeep - /03_Machine_Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb - /03_Machine_Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb - /03_Machine_Learning/DS_mRNA_limma_dataset_svm_F.ipynb - /03_Machine_Learning/mRNA_DS_preprocessed_training_data.csv - /05_Data_Annotation/GO cellular component.png - /05_Data_Annotation/go.csv - /05_Data_Annotation/GO biological function.png - /05_Data_Annotation/GO_enrichment.R - /05_Data_Annotation/GO molecular function.png - /05_Data_Annotation/biomart_for_annotation.R - /05_Data_Annotation/mrna.csv - /06_Survival_Analysis/.gitkeep - /06_Survival_Analysis/document.pdf
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aakan96 authored
- /Project_Pitch.pdf - /project_workflow.PNG - /00_Project_Pitch.pdf - /00_project_workflow.PNG
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aakan96 authored
- /Differential Expression Analysis/Deseq2/mRNA/GSE20347 mRNA.R - /Differential Expression Analysis/Deseq2/mRNA/GSE29001 mRNA.R - /Differential Expression Analysis/Deseq2/mRNA/GSE70409 mRNA.R - /Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /Differential Expression Analysis/Limma/mRNA/GSE20347.R - /Differential Expression Analysis/Limma/mRNA/GSE29001.R - /Differential Expression Analysis/Limma/mRNA/GSE70409.R - /Differential Expression Analysis/Limma/miRNA/GSE43732.R - /Differential Expression Analysis/Limma/miRNA/GSE55857.R - /Differential Expression Analysis/Limma/miRNA/GSE6188.R - /Differential Expression Analysis/merging/.gitkeep - /MultiMIR/multimir_results_final.xlsx - /Data Annotation/GO biological function.png - /Data Annotation/GO cellular component.png - /Data Annotation/GO molecular function.png - /Data Annotation/GO_enrichment.R - /Data Annotation/biomart_for_annotation.R - /Data Annotation/go.csv - /Data Annotation/mrna.csv - /Machine Learning/.gitkeep - /Machine Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb - /Machine Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb - /Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb - /Machine Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb - /Machine Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb - /Machine Learning/mRNA_DS_preprocessed_training_data.csv - /Cytoscape/cytoscape.xlsx - /Cytoscape/extract_mrna_names_from_mirna.R - /Cytoscape/miRNAmRNA.xlsx - /Cytoscape/multimir_results.xlsx - /Cytoscape/new.png - /Survival Analysis/.gitkeep - /Survival Analysis/document.pdf - /01_Differential Expression Analysis/Deseq2/mRNA/GSE70409 mRNA.R - /01_Differential Expression Analysis/Deseq2/mRNA/GSE29001 mRNA.R - /01_Differential Expression Analysis/Deseq2/mRNA/GSE20347 mRNA.R - /01_Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /01_Differential Expression Analysis/Limma/mRNA/GSE29001.R - /01_Differential Expression Analysis/Limma/mRNA/GSE70409.R - /01_Differential Expression Analysis/Limma/mRNA/GSE20347.R - /01_Differential Expression Analysis/Limma/miRNA/GSE55857.R - /01_Differential Expression Analysis/Limma/miRNA/GSE6188.R - /01_Differential Expression Analysis/Limma/miRNA/GSE43732.R - /01_Differential Expression Analysis/merging/.gitkeep - /02_MultiMIR/multimir_results_final.xlsx - /05_Data Annotation/GO biological function.png - /05_Data Annotation/biomart_for_annotation.R - /05_Data Annotation/GO cellular component.png - /05_Data Annotation/go.csv - /05_Data Annotation/GO molecular function.png - /05_Data Annotation/GO_enrichment.R - /05_Data Annotation/mrna.csv - /03_Machine Learning/.gitkeep - /03_Machine Learning/mRNA_DS_preprocessed_training_data.csv - /03_Machine Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb - /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb - /03_Machine Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb - /04_Cytoscape/extract_mrna_names_from_mirna.R - /04_Cytoscape/miRNAmRNA.xlsx - /04_Cytoscape/cytoscape.xlsx - /04_Cytoscape/new.png - /04_Cytoscape/multimir_results.xlsx - /06_Survival Analysis/.gitkeep - /06_Survival Analysis/document.pdf
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