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  1. Jul 21, 2023
  3. Jul 20, 2023
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      Update file README.md · ee08a7f9
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      Update 8 files · 5d495ea9
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      - /03_Machine_Learning/DS/miRNA_DS_metadata_col_info.csv
- /03_Machine_Learning/DS/miRNA_DS_preprocessed_data.csv
- /03_Machine_Learning/DS/mRNA_DS_metadata_col_info.csv
- /03_Machine_Learning/DS/mRNA_DS_metadata_col_test_info.csv
- /03_Machine_Learning/DS/mRNA_DS_preprocessed_training_data.csv
- /03_Machine_Learning/DS/mRNA_DS_test_data.csv
- /03_Machine_Learning/DS/mRNA_TCGA_DS_col_data.csv
- /03_Machine_Learning/DS/mRNA_TCGA_DS_test_data.csv
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      Update 10 files · 27f47ac3
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      - /03_Machine_Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb
- /03_Machine_Learning/DS_mRNA_limma_dataset_svm_F.ipynb
- /03_Machine_Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb
- /03_Machine_Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb
- /03_Machine_Learning/mRNA_TCGA_limma_dataset_svm_final.ipynb
- /03_Machine_Learning/mRNA_TCGA_limma_dataset_xgb_final.ipynb
- /03_Machine_Learning/mRNA_limma_dataset_xgb_described.ipynb
- /03_Machine_Learning/mRNA_limma_dataset_svm_final.ipynb
- /03_Machine_Learning/miRNA_limma_dataset_SVM_final.ipynb
- /03_Machine_Learning/miRNA_limma_dataset_xgb_described.ipynb
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      Update file merge_main.R · 1554acb8
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      Update 54 files · e4645e6d
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      - /01_Differential Expression Analysis/Deseq2/mRNA/GSE20347​ mRNA​.R
- /01_Differential Expression Analysis/Deseq2/mRNA/GSE29001​ mRNA​.R
- /01_Differential Expression Analysis/Deseq2/mRNA/GSE70409​ mRNA​.R
- /01_Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R
- /01_Differential Expression Analysis/Limma/mRNA/GSE20347.R
- /01_Differential Expression Analysis/Limma/mRNA/GSE29001.R
- /01_Differential Expression Analysis/Limma/mRNA/GSE70409.R
- /01_Differential Expression Analysis/Limma/miRNA/GSE43732.R
- /01_Differential Expression Analysis/Limma/miRNA/GSE55857.R
- /01_Differential Expression Analysis/Limma/miRNA/GSE6188.R
- /01_Differential Expression Analysis/merging/.gitkeep
- /03_Machine Learning/.gitkeep
- /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb
- /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb
- /03_Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb
- /03_Machine Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb
- /03_Machine Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb
- /03_Machine Learning/mRNA_DS_preprocessed_training_data.csv
- /05_Data Annotation/GO biological function.png
- /05_Data Annotation/GO cellular component.png
- /05_Data Annotation/GO molecular function.png
- /05_Data Annotation/GO_enrichment.R
- /05_Data Annotation/biomart_for_annotation.R
- /05_Data Annotation/go.csv
- /05_Data Annotation/mrna.csv
- /06_Survival Analysis/.gitkeep
- /06_Survival Analysis/document.pdf
- /01_Differential_Expression_Analysis/Deseq2/mRNA/GSE20347​ mRNA​.R
- /01_Differential_Expression_Analysis/Deseq2/mRNA/GSE70409​ mRNA​.R
- /01_Differential_Expression_Analysis/Deseq2/mRNA/GSE29001​ mRNA​.R
- /01_Differential_Expression_Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R
- /01_Differential_Expression_Analysis/Limma/mRNA/GSE29001.R
- /01_Differential_Expression_Analysis/Limma/mRNA/GSE20347.R
- /01_Differential_Expression_Analysis/Limma/mRNA/GSE70409.R
- /01_Differential_Expression_Analysis/Limma/miRNA/GSE6188.R
- /01_Differential_Expression_Analysis/Limma/miRNA/GSE43732.R
- /01_Differential_Expression_Analysis/Limma/miRNA/GSE55857.R
- /01_Differential_Expression_Analysis/merging/.gitkeep
- /03_Machine_Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb
- /03_Machine_Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb
- /03_Machine_Learning/.gitkeep
- /03_Machine_Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb
- /03_Machine_Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb
- /03_Machine_Learning/DS_mRNA_limma_dataset_svm_F.ipynb
- /03_Machine_Learning/mRNA_DS_preprocessed_training_data.csv
- /05_Data_Annotation/GO cellular component.png
- /05_Data_Annotation/go.csv
- /05_Data_Annotation/GO biological function.png
- /05_Data_Annotation/GO_enrichment.R
- /05_Data_Annotation/GO molecular function.png
- /05_Data_Annotation/biomart_for_annotation.R
- /05_Data_Annotation/mrna.csv
- /06_Survival_Analysis/.gitkeep
- /06_Survival_Analysis/document.pdf
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      Update 4 files · 0edaf2bb
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      - /Project_Pitch.pdf
- /project_workflow.PNG
- /00_Project_Pitch.pdf
- /00_project_workflow.PNG
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      Update 66 files · 054220fe
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      - /Differential Expression Analysis/Deseq2/mRNA/GSE20347​ mRNA​.R
- /Differential Expression Analysis/Deseq2/mRNA/GSE29001​ mRNA​.R
- /Differential Expression Analysis/Deseq2/mRNA/GSE70409​ mRNA​.R
- /Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R
- /Differential Expression Analysis/Limma/mRNA/GSE20347.R
- /Differential Expression Analysis/Limma/mRNA/GSE29001.R
- /Differential Expression Analysis/Limma/mRNA/GSE70409.R
- /Differential Expression Analysis/Limma/miRNA/GSE43732.R
- /Differential Expression Analysis/Limma/miRNA/GSE55857.R
- /Differential Expression Analysis/Limma/miRNA/GSE6188.R
- /Differential Expression Analysis/merging/.gitkeep
- /MultiMIR/multimir_results_final.xlsx
- /Data Annotation/GO biological function.png
- /Data Annotation/GO cellular component.png
- /Data Annotation/GO molecular function.png
- /Data Annotation/GO_enrichment.R
- /Data Annotation/biomart_for_annotation.R
- /Data Annotation/go.csv
- /Data Annotation/mrna.csv
- /Machine Learning/.gitkeep
- /Machine Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb
- /Machine Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb
- /Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb
- /Machine Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb
- /Machine Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb
- /Machine Learning/mRNA_DS_preprocessed_training_data.csv
- /Cytoscape/cytoscape.xlsx
- /Cytoscape/extract_mrna_names_from_mirna.R
- /Cytoscape/miRNAmRNA.xlsx
- /Cytoscape/multimir_results.xlsx
- /Cytoscape/new.png
- /Survival Analysis/.gitkeep
- /Survival Analysis/document.pdf
- /01_Differential Expression Analysis/Deseq2/mRNA/GSE70409​ mRNA​.R
- /01_Differential Expression Analysis/Deseq2/mRNA/GSE29001​ mRNA​.R
- /01_Differential Expression Analysis/Deseq2/mRNA/GSE20347​ mRNA​.R
- /01_Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R
- /01_Differential Expression Analysis/Limma/mRNA/GSE29001.R
- /01_Differential Expression Analysis/Limma/mRNA/GSE70409.R
- /01_Differential Expression Analysis/Limma/mRNA/GSE20347.R
- /01_Differential Expression Analysis/Limma/miRNA/GSE55857.R
- /01_Differential Expression Analysis/Limma/miRNA/GSE6188.R
- /01_Differential Expression Analysis/Limma/miRNA/GSE43732.R
- /01_Differential Expression Analysis/merging/.gitkeep
- /02_MultiMIR/multimir_results_final.xlsx
- /05_Data Annotation/GO biological function.png
- /05_Data Annotation/biomart_for_annotation.R
- /05_Data Annotation/GO cellular component.png
- /05_Data Annotation/go.csv
- /05_Data Annotation/GO molecular function.png
- /05_Data Annotation/GO_enrichment.R
- /05_Data Annotation/mrna.csv
- /03_Machine Learning/.gitkeep
- /03_Machine Learning/mRNA_DS_preprocessed_training_data.csv
- /03_Machine Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb
- /03_Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb
- /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb
- /03_Machine Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb
- /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb
- /04_Cytoscape/extract_mrna_names_from_mirna.R
- /04_Cytoscape/miRNAmRNA.xlsx
- /04_Cytoscape/cytoscape.xlsx
- /04_Cytoscape/new.png
- /04_Cytoscape/multimir_results.xlsx
- /06_Survival Analysis/.gitkeep
- /06_Survival Analysis/document.pdf
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